Experiment: Ying_AminoAcid20 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF951 and GFF952 overlap by 4 nucleotides GFF952 and GFF953 are separated by 10 nucleotides GFF953 and GFF954 are separated by 624 nucleotides GFF954 and GFF955 are separated by 103 nucleotides
GFF951 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 685,641 to 687,509
GFF951
GFF952 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 687,506 to 688,288
GFF952
GFF953 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 688,299 to 689,090
GFF953
GFF954 - Mobile element protein, at 689,715 to 689,921
GFF954
GFF955 - Mobile element protein, at 690,025 to 690,189
GFF955
Position (kb) 688
689
690 Strain fitness (log2 ratio) -1
0
1 at 687.364 kb on + strand at 687.397 kb on + strand at 687.398 kb on - strand at 687.538 kb on - strand at 687.538 kb on - strand at 687.822 kb on + strand, within GFF952 at 687.823 kb on - strand, within GFF952 at 688.188 kb on + strand, within GFF952 at 688.272 kb on - strand at 688.272 kb on - strand at 688.327 kb on + strand at 688.327 kb on + strand at 688.328 kb on - strand at 688.328 kb on - strand at 688.328 kb on - strand at 688.381 kb on + strand, within GFF953 at 688.381 kb on + strand, within GFF953 at 688.382 kb on - strand, within GFF953 at 688.459 kb on + strand, within GFF953 at 688.459 kb on + strand, within GFF953 at 688.459 kb on + strand, within GFF953 at 688.459 kb on + strand, within GFF953 at 688.460 kb on - strand, within GFF953 at 688.460 kb on - strand, within GFF953 at 688.466 kb on - strand, within GFF953 at 688.675 kb on + strand, within GFF953 at 688.723 kb on + strand, within GFF953 at 688.723 kb on + strand, within GFF953 at 688.724 kb on - strand, within GFF953 at 688.724 kb on - strand, within GFF953 at 688.724 kb on - strand, within GFF953 at 688.768 kb on + strand, within GFF953 at 689.001 kb on + strand, within GFF953 at 689.001 kb on + strand, within GFF953 at 689.002 kb on - strand, within GFF953 at 689.059 kb on + strand at 689.273 kb on + strand at 689.274 kb on - strand at 689.414 kb on - strand at 689.539 kb on + strand at 689.539 kb on + strand at 689.539 kb on + strand at 689.582 kb on + strand at 689.582 kb on + strand at 689.582 kb on + strand at 689.582 kb on + strand at 689.583 kb on - strand at 689.583 kb on - strand at 689.583 kb on - strand at 689.583 kb on - strand at 689.618 kb on + strand at 689.618 kb on + strand at 689.618 kb on + strand at 689.618 kb on + strand at 689.618 kb on + strand at 689.618 kb on + strand at 689.618 kb on + strand at 689.619 kb on - strand at 689.619 kb on - strand at 689.619 kb on - strand at 689.620 kb on - strand at 689.621 kb on + strand at 689.621 kb on + strand at 689.621 kb on + strand at 689.621 kb on + strand at 689.622 kb on - strand at 689.622 kb on - strand at 689.622 kb on - strand at 689.622 kb on - strand at 689.622 kb on - strand at 689.622 kb on - strand at 689.712 kb on + strand at 689.712 kb on + strand at 689.712 kb on + strand at 689.712 kb on + strand at 689.712 kb on + strand at 689.712 kb on + strand at 689.713 kb on - strand at 689.713 kb on - strand at 689.946 kb on + strand at 689.946 kb on + strand at 689.946 kb on + strand at 689.946 kb on + strand at 689.946 kb on + strand at 689.947 kb on - strand at 689.947 kb on - strand at 689.947 kb on - strand at 689.947 kb on - strand at 689.947 kb on - strand at 689.947 kb on - strand at 689.965 kb on + strand at 689.965 kb on + strand at 689.966 kb on - strand at 689.966 kb on - strand at 689.966 kb on - strand at 689.966 kb on - strand at 690.028 kb on + strand at 690.028 kb on + strand at 690.028 kb on + strand at 690.028 kb on - strand at 690.029 kb on - strand at 690.029 kb on - strand at 690.029 kb on - strand at 690.029 kb on - strand at 690.029 kb on - strand at 690.029 kb on - strand at 690.037 kb on + strand at 690.066 kb on + strand, within GFF955 at 690.067 kb on - strand, within GFF955
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2 remove 687,364 + -0.0 687,397 + -1.1 687,398 - +0.3 687,538 - +0.0 687,538 - -0.3 687,822 + GFF952 0.40 -1.0 687,823 - GFF952 0.40 -1.0 688,188 + GFF952 0.87 -0.0 688,272 - -0.4 688,272 - -1.0 688,327 + -1.4 688,327 + -0.6 688,328 - -0.5 688,328 - -0.2 688,328 - +0.2 688,381 + GFF953 0.10 -0.1 688,381 + GFF953 0.10 +0.7 688,382 - GFF953 0.10 +0.2 688,459 + GFF953 0.20 +0.4 688,459 + GFF953 0.20 -0.4 688,459 + GFF953 0.20 +0.7 688,459 + GFF953 0.20 -1.0 688,460 - GFF953 0.20 +0.1 688,460 - GFF953 0.20 +0.2 688,466 - GFF953 0.21 +0.0 688,675 + GFF953 0.47 +0.0 688,723 + GFF953 0.54 +0.0 688,723 + GFF953 0.54 -0.1 688,724 - GFF953 0.54 -0.4 688,724 - GFF953 0.54 -0.2 688,724 - GFF953 0.54 -0.1 688,768 + GFF953 0.59 -1.2 689,001 + GFF953 0.89 -0.3 689,001 + GFF953 0.89 +0.7 689,002 - GFF953 0.89 +0.0 689,059 + -0.4 689,273 + -0.1 689,274 - +0.7 689,414 - -0.1 689,539 + -0.6 689,539 + +0.2 689,539 + +1.0 689,582 + +0.0 689,582 + -0.3 689,582 + +0.4 689,582 + -0.7 689,583 - -0.1 689,583 - -0.1 689,583 - -0.0 689,583 - +0.2 689,618 + +0.2 689,618 + +0.1 689,618 + +0.6 689,618 + +0.1 689,618 + -0.7 689,618 + -1.1 689,618 + -0.2 689,619 - -0.4 689,619 - -0.6 689,619 - -0.2 689,620 - -0.2 689,621 + -0.2 689,621 + -0.3 689,621 + +0.5 689,621 + -0.2 689,622 - -0.3 689,622 - -0.5 689,622 - -0.3 689,622 - -1.2 689,622 - +0.4 689,622 - -0.5 689,712 + -0.2 689,712 + +0.3 689,712 + -0.6 689,712 + +0.7 689,712 + -0.1 689,712 + +0.8 689,713 - +1.0 689,713 - -0.9 689,946 + +0.0 689,946 + -0.4 689,946 + -0.3 689,946 + -0.0 689,946 + -0.1 689,947 - -0.8 689,947 - -0.5 689,947 - -0.4 689,947 - +0.8 689,947 - -1.1 689,947 - +0.8 689,965 + +0.0 689,965 + -0.4 689,966 - -0.2 689,966 - +0.7 689,966 - -0.4 689,966 - +1.6 690,028 + +0.0 690,028 + -1.0 690,028 + -1.1 690,028 - -0.5 690,029 - +0.7 690,029 - -0.5 690,029 - +0.1 690,029 - -0.4 690,029 - +0.3 690,029 - +0.3 690,037 + -0.1 690,066 + GFF955 0.25 +1.4 690,067 - GFF955 0.25 -0.2
Or see this region's nucleotide sequence