Experiment: Ying_AminoAcid20 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF906 and GFF907 are separated by 26 nucleotides GFF907 and GFF908 are separated by 63 nucleotides GFF908 and GFF909 are separated by 224 nucleotides
GFF906 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16), at 635,502 to 636,704
GFF906
GFF907 - 2,3-dihydroxybenzoate-AMP ligase (EC 2.7.7.58), at 636,731 to 638,368
GFF907
GFF908 - Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-), at 638,432 to 638,992
GFF908
GFF909 - Acetyl-coenzyme A synthetase (EC 6.2.1.1), at 639,217 to 641,184
GFF909
Position (kb) 636
637
638
639 Strain fitness (log2 ratio) -2
-1
0
1
2 at 635.821 kb on + strand, within GFF906 at 635.822 kb on - strand, within GFF906 at 635.822 kb on - strand, within GFF906 at 635.822 kb on - strand, within GFF906 at 635.822 kb on - strand, within GFF906 at 635.869 kb on + strand, within GFF906 at 635.870 kb on - strand, within GFF906 at 635.870 kb on - strand, within GFF906 at 635.942 kb on - strand, within GFF906 at 635.965 kb on + strand, within GFF906 at 635.965 kb on + strand, within GFF906 at 635.965 kb on + strand, within GFF906 at 635.965 kb on + strand, within GFF906 at 635.965 kb on + strand, within GFF906 at 635.966 kb on - strand, within GFF906 at 635.966 kb on - strand, within GFF906 at 636.064 kb on + strand, within GFF906 at 636.064 kb on + strand, within GFF906 at 636.065 kb on - strand, within GFF906 at 636.466 kb on + strand, within GFF906 at 636.466 kb on + strand, within GFF906 at 636.466 kb on + strand, within GFF906 at 636.467 kb on - strand, within GFF906 at 636.467 kb on - strand, within GFF906 at 636.813 kb on + strand at 636.814 kb on - strand at 636.838 kb on - strand at 636.838 kb on - strand at 636.922 kb on + strand, within GFF907 at 636.923 kb on - strand, within GFF907 at 637.021 kb on + strand, within GFF907 at 637.142 kb on + strand, within GFF907 at 637.165 kb on - strand, within GFF907 at 637.165 kb on - strand, within GFF907 at 637.195 kb on - strand, within GFF907 at 637.263 kb on - strand, within GFF907 at 637.811 kb on + strand, within GFF907 at 637.811 kb on + strand, within GFF907 at 637.811 kb on + strand, within GFF907 at 637.811 kb on + strand, within GFF907 at 637.812 kb on - strand, within GFF907 at 637.812 kb on - strand, within GFF907 at 637.891 kb on + strand, within GFF907 at 637.892 kb on - strand, within GFF907 at 637.892 kb on - strand, within GFF907 at 638.096 kb on + strand, within GFF907 at 638.096 kb on + strand, within GFF907 at 638.193 kb on + strand, within GFF907 at 638.194 kb on - strand, within GFF907 at 638.334 kb on + strand at 638.569 kb on + strand, within GFF908 at 638.599 kb on - strand, within GFF908 at 638.755 kb on - strand, within GFF908 at 638.818 kb on - strand, within GFF908 at 638.853 kb on + strand, within GFF908 at 638.854 kb on - strand, within GFF908 at 638.973 kb on + strand at 638.973 kb on + strand at 638.973 kb on + strand at 638.973 kb on + strand at 638.974 kb on - strand at 638.974 kb on - strand at 638.974 kb on - strand at 639.065 kb on + strand at 639.066 kb on - strand at 639.140 kb on + strand at 639.141 kb on - strand at 639.141 kb on - strand at 639.147 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2 remove 635,821 + GFF906 0.27 +1.1 635,822 - GFF906 0.27 +0.5 635,822 - GFF906 0.27 +0.9 635,822 - GFF906 0.27 +0.2 635,822 - GFF906 0.27 +0.0 635,869 + GFF906 0.31 +0.1 635,870 - GFF906 0.31 +1.1 635,870 - GFF906 0.31 +0.4 635,942 - GFF906 0.37 -0.7 635,965 + GFF906 0.38 +0.1 635,965 + GFF906 0.38 +0.7 635,965 + GFF906 0.38 -0.1 635,965 + GFF906 0.38 -0.5 635,965 + GFF906 0.38 +1.0 635,966 - GFF906 0.39 +0.2 635,966 - GFF906 0.39 +0.1 636,064 + GFF906 0.47 -0.6 636,064 + GFF906 0.47 -0.9 636,065 - GFF906 0.47 +0.8 636,466 + GFF906 0.80 -0.9 636,466 + GFF906 0.80 -0.1 636,466 + GFF906 0.80 -0.1 636,467 - GFF906 0.80 -0.1 636,467 - GFF906 0.80 -0.2 636,813 + -1.2 636,814 - +1.3 636,838 - -0.5 636,838 - +0.6 636,922 + GFF907 0.12 -2.0 636,923 - GFF907 0.12 -0.4 637,021 + GFF907 0.18 +0.1 637,142 + GFF907 0.25 +2.4 637,165 - GFF907 0.26 +0.8 637,165 - GFF907 0.26 -0.3 637,195 - GFF907 0.28 +0.8 637,263 - GFF907 0.32 +0.6 637,811 + GFF907 0.66 -0.0 637,811 + GFF907 0.66 +1.1 637,811 + GFF907 0.66 -0.1 637,811 + GFF907 0.66 +0.2 637,812 - GFF907 0.66 -0.4 637,812 - GFF907 0.66 -1.6 637,891 + GFF907 0.71 +0.5 637,892 - GFF907 0.71 -0.2 637,892 - GFF907 0.71 +0.2 638,096 + GFF907 0.83 +0.1 638,096 + GFF907 0.83 +0.1 638,193 + GFF907 0.89 +0.4 638,194 - GFF907 0.89 +0.4 638,334 + -0.6 638,569 + GFF908 0.24 -0.2 638,599 - GFF908 0.30 +0.2 638,755 - GFF908 0.58 +0.6 638,818 - GFF908 0.69 +0.2 638,853 + GFF908 0.75 +0.1 638,854 - GFF908 0.75 -0.0 638,973 + +0.6 638,973 + -0.2 638,973 + -0.1 638,973 + -0.4 638,974 - -1.1 638,974 - +0.0 638,974 - -0.5 639,065 + -0.4 639,066 - +0.1 639,140 + -0.2 639,141 - -0.2 639,141 - -0.2 639,147 - +0.1
Or see this region's nucleotide sequence