Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF886

Experiment: Ying_AminoAcid20 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF884 and GFF885 are separated by 31 nucleotidesGFF885 and GFF886 are separated by 54 nucleotidesGFF886 and GFF887 are separated by 11 nucleotides GFF884 - Acetoacetyl-CoA synthetase (EC 6.2.1.16), at 610,324 to 612,306 GFF884 GFF885 - Naphthoate synthase (EC 4.1.3.36), at 612,338 to 613,120 GFF885 GFF886 - Probable acyl-CoA dehydrogenase (EC 1.3.99.3), at 613,175 to 614,329 GFF886 GFF887 - L-carnitine dehydratase/bile acid-inducible protein F (EC 2.8.3.16), at 614,341 to 615,519 GFF887 Position (kb) 613 614 615Strain fitness (log2 ratio) -1 0 1at 612.322 kb on - strandat 612.360 kb on - strandat 612.374 kb on + strandat 612.374 kb on + strandat 612.375 kb on - strandat 612.650 kb on + strand, within GFF885at 612.650 kb on + strand, within GFF885at 612.651 kb on - strand, within GFF885at 612.651 kb on - strand, within GFF885at 612.761 kb on + strand, within GFF885at 612.761 kb on + strand, within GFF885at 612.762 kb on - strand, within GFF885at 612.762 kb on - strand, within GFF885at 612.914 kb on + strand, within GFF885at 612.914 kb on + strand, within GFF885at 613.036 kb on + strand, within GFF885at 613.036 kb on + strand, within GFF885at 613.037 kb on - strand, within GFF885at 613.040 kb on + strand, within GFF885at 613.040 kb on + strand, within GFF885at 613.041 kb on - strand, within GFF885at 613.041 kb on - strand, within GFF885at 613.190 kb on + strandat 613.340 kb on + strand, within GFF886at 613.436 kb on + strand, within GFF886at 613.436 kb on + strand, within GFF886at 613.436 kb on + strand, within GFF886at 613.436 kb on + strand, within GFF886at 613.436 kb on + strand, within GFF886at 613.437 kb on - strand, within GFF886at 613.437 kb on - strand, within GFF886at 613.437 kb on - strand, within GFF886at 613.437 kb on - strand, within GFF886at 613.437 kb on - strand, within GFF886at 613.437 kb on - strand, within GFF886at 613.487 kb on + strand, within GFF886at 613.488 kb on - strand, within GFF886at 613.605 kb on - strand, within GFF886at 613.727 kb on - strand, within GFF886at 613.875 kb on - strand, within GFF886at 613.875 kb on - strand, within GFF886at 614.135 kb on + strand, within GFF886at 614.136 kb on - strand, within GFF886at 614.136 kb on - strand, within GFF886at 614.213 kb on + strand, within GFF886at 614.214 kb on - strandat 614.250 kb on - strandat 614.288 kb on + strandat 614.288 kb on + strandat 614.289 kb on - strandat 614.480 kb on - strand, within GFF887at 614.580 kb on - strand, within GFF887at 614.731 kb on + strand, within GFF887at 614.731 kb on + strand, within GFF887at 614.732 kb on - strand, within GFF887at 614.749 kb on + strand, within GFF887at 614.749 kb on + strand, within GFF887at 614.750 kb on - strand, within GFF887at 614.750 kb on - strand, within GFF887at 614.854 kb on + strand, within GFF887at 614.854 kb on + strand, within GFF887at 614.854 kb on + strand, within GFF887at 614.855 kb on - strand, within GFF887at 614.855 kb on - strand, within GFF887at 614.855 kb on - strand, within GFF887at 614.855 kb on - strand, within GFF887at 614.860 kb on + strand, within GFF887at 614.861 kb on - strand, within GFF887at 614.861 kb on - strand, within GFF887at 614.969 kb on - strand, within GFF887at 614.971 kb on + strand, within GFF887at 614.971 kb on + strand, within GFF887at 615.026 kb on + strand, within GFF887at 615.026 kb on + strand, within GFF887at 615.027 kb on - strand, within GFF887at 615.028 kb on + strand, within GFF887at 615.028 kb on + strand, within GFF887at 615.028 kb on + strand, within GFF887at 615.028 kb on + strand, within GFF887at 615.028 kb on + strand, within GFF887at 615.029 kb on - strand, within GFF887at 615.029 kb on - strand, within GFF887at 615.148 kb on + strand, within GFF887at 615.149 kb on - strand, within GFF887at 615.149 kb on - strand, within GFF887

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2
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612,322 - +0.3
612,360 - -0.2
612,374 + -0.6
612,374 + +0.2
612,375 - -0.3
612,650 + GFF885 0.40 +0.1
612,650 + GFF885 0.40 +0.1
612,651 - GFF885 0.40 +0.2
612,651 - GFF885 0.40 +0.6
612,761 + GFF885 0.54 -0.1
612,761 + GFF885 0.54 -0.6
612,762 - GFF885 0.54 +0.8
612,762 - GFF885 0.54 +0.5
612,914 + GFF885 0.74 -0.0
612,914 + GFF885 0.74 -0.3
613,036 + GFF885 0.89 -1.4
613,036 + GFF885 0.89 +0.5
613,037 - GFF885 0.89 +0.5
613,040 + GFF885 0.90 +0.3
613,040 + GFF885 0.90 -0.4
613,041 - GFF885 0.90 -0.4
613,041 - GFF885 0.90 -1.6
613,190 + +0.2
613,340 + GFF886 0.14 +0.2
613,436 + GFF886 0.23 -0.5
613,436 + GFF886 0.23 -0.2
613,436 + GFF886 0.23 +0.9
613,436 + GFF886 0.23 -0.2
613,436 + GFF886 0.23 -1.2
613,437 - GFF886 0.23 +1.2
613,437 - GFF886 0.23 +0.8
613,437 - GFF886 0.23 +0.7
613,437 - GFF886 0.23 -1.4
613,437 - GFF886 0.23 -1.2
613,437 - GFF886 0.23 -0.4
613,487 + GFF886 0.27 +0.2
613,488 - GFF886 0.27 +0.1
613,605 - GFF886 0.37 -1.0
613,727 - GFF886 0.48 +0.0
613,875 - GFF886 0.61 +0.1
613,875 - GFF886 0.61 +0.4
614,135 + GFF886 0.83 -0.6
614,136 - GFF886 0.83 -0.6
614,136 - GFF886 0.83 -0.8
614,213 + GFF886 0.90 -0.3
614,214 - +0.3
614,250 - -0.2
614,288 + +0.3
614,288 + -0.2
614,289 - -0.1
614,480 - GFF887 0.12 -0.4
614,580 - GFF887 0.20 -0.2
614,731 + GFF887 0.33 -0.1
614,731 + GFF887 0.33 +0.1
614,732 - GFF887 0.33 -0.5
614,749 + GFF887 0.35 -0.6
614,749 + GFF887 0.35 +1.6
614,750 - GFF887 0.35 +0.1
614,750 - GFF887 0.35 -0.3
614,854 + GFF887 0.44 -0.6
614,854 + GFF887 0.44 -0.2
614,854 + GFF887 0.44 +1.0
614,855 - GFF887 0.44 +0.3
614,855 - GFF887 0.44 +0.3
614,855 - GFF887 0.44 +0.2
614,855 - GFF887 0.44 -0.3
614,860 + GFF887 0.44 -0.4
614,861 - GFF887 0.44 +0.1
614,861 - GFF887 0.44 +0.3
614,969 - GFF887 0.53 +0.4
614,971 + GFF887 0.53 +0.8
614,971 + GFF887 0.53 +0.4
615,026 + GFF887 0.58 +0.2
615,026 + GFF887 0.58 +0.4
615,027 - GFF887 0.58 -0.2
615,028 + GFF887 0.58 -0.2
615,028 + GFF887 0.58 +0.0
615,028 + GFF887 0.58 -0.2
615,028 + GFF887 0.58 -0.2
615,028 + GFF887 0.58 -0.7
615,029 - GFF887 0.58 -0.3
615,029 - GFF887 0.58 +0.1
615,148 + GFF887 0.68 +0.1
615,149 - GFF887 0.69 -0.3
615,149 - GFF887 0.69 -0.3

Or see this region's nucleotide sequence