Experiment: Ying_AminoAcid20 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF842 and GFF843 overlap by 4 nucleotides GFF843 and GFF844 are separated by 426 nucleotides GFF844 and GFF845 are separated by 225 nucleotides
GFF842 - FIG007317: Chromosome segregation protein SMC-like, at 543,424 to 546,846
GFF842
GFF843 - FIG005429: hypothetical protein, at 546,843 to 548,054
GFF843
GFF844 - hypothetical protein, at 548,481 to 548,726
GFF844
GFF845 - Prevent host death protein, Phd antitoxin # C, at 548,952 to 549,251
GFF845
Position (kb) 546
547
548
549 Strain fitness (log2 ratio) -1
0
1
2 at 545.954 kb on - strand, within GFF842 at 546.136 kb on + strand, within GFF842 at 546.136 kb on + strand, within GFF842 at 546.136 kb on + strand, within GFF842 at 546.137 kb on - strand, within GFF842 at 546.137 kb on - strand, within GFF842 at 546.430 kb on + strand, within GFF842 at 546.478 kb on + strand, within GFF842 at 546.479 kb on - strand, within GFF842 at 546.505 kb on + strand at 546.604 kb on + strand at 546.761 kb on - strand at 546.801 kb on - strand at 546.946 kb on + strand at 547.076 kb on - strand, within GFF843 at 547.302 kb on + strand, within GFF843 at 547.302 kb on + strand, within GFF843 at 547.303 kb on - strand, within GFF843 at 547.606 kb on + strand, within GFF843 at 547.606 kb on + strand, within GFF843 at 547.606 kb on + strand, within GFF843 at 547.607 kb on - strand, within GFF843 at 547.607 kb on - strand, within GFF843 at 547.607 kb on - strand, within GFF843 at 547.607 kb on - strand, within GFF843 at 547.735 kb on - strand, within GFF843 at 547.738 kb on - strand, within GFF843 at 547.920 kb on + strand, within GFF843 at 548.011 kb on + strand at 548.012 kb on + strand at 548.012 kb on + strand at 548.012 kb on + strand at 548.013 kb on - strand at 548.013 kb on - strand at 548.013 kb on - strand at 548.252 kb on - strand at 548.408 kb on + strand at 548.409 kb on - strand at 548.418 kb on + strand at 548.419 kb on - strand at 548.560 kb on - strand, within GFF844 at 548.560 kb on - strand, within GFF844 at 548.696 kb on + strand, within GFF844 at 548.696 kb on + strand, within GFF844 at 548.696 kb on + strand, within GFF844 at 548.697 kb on - strand, within GFF844 at 548.803 kb on - strand at 548.803 kb on - strand at 548.803 kb on - strand at 548.815 kb on + strand at 548.816 kb on - strand at 548.816 kb on - strand at 548.816 kb on - strand at 548.890 kb on + strand at 548.891 kb on - strand at 548.891 kb on - strand at 549.035 kb on - strand, within GFF845 at 549.035 kb on - strand, within GFF845 at 549.035 kb on - strand, within GFF845 at 549.035 kb on - strand, within GFF845 at 549.035 kb on - strand, within GFF845
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2 remove 545,954 - GFF842 0.74 -0.0 546,136 + GFF842 0.79 -0.5 546,136 + GFF842 0.79 -0.5 546,136 + GFF842 0.79 -0.2 546,137 - GFF842 0.79 -0.2 546,137 - GFF842 0.79 -0.5 546,430 + GFF842 0.88 +1.3 546,478 + GFF842 0.89 -0.6 546,479 - GFF842 0.89 -1.4 546,505 + +0.7 546,604 + -0.4 546,761 - -0.5 546,801 - -0.0 546,946 + -0.3 547,076 - GFF843 0.19 -1.3 547,302 + GFF843 0.38 -0.4 547,302 + GFF843 0.38 -0.0 547,303 - GFF843 0.38 +0.0 547,606 + GFF843 0.63 -0.2 547,606 + GFF843 0.63 +1.3 547,606 + GFF843 0.63 -0.0 547,607 - GFF843 0.63 +0.4 547,607 - GFF843 0.63 +1.4 547,607 - GFF843 0.63 +0.5 547,607 - GFF843 0.63 -0.3 547,735 - GFF843 0.74 -0.4 547,738 - GFF843 0.74 +0.3 547,920 + GFF843 0.89 +0.2 548,011 + +0.2 548,012 + -0.2 548,012 + -1.4 548,012 + +0.3 548,013 - -0.0 548,013 - -0.1 548,013 - -0.4 548,252 - +0.5 548,408 + +0.2 548,409 - +0.6 548,418 + +1.8 548,419 - +1.1 548,560 - GFF844 0.32 -1.0 548,560 - GFF844 0.32 +0.5 548,696 + GFF844 0.87 -0.2 548,696 + GFF844 0.87 +0.3 548,696 + GFF844 0.87 +0.3 548,697 - GFF844 0.88 +0.8 548,803 - -1.7 548,803 - +0.0 548,803 - -0.0 548,815 + -0.2 548,816 - +0.3 548,816 - +0.2 548,816 - -0.3 548,890 + -0.0 548,891 - +0.3 548,891 - +0.9 549,035 - GFF845 0.28 -0.3 549,035 - GFF845 0.28 +0.0 549,035 - GFF845 0.28 -0.2 549,035 - GFF845 0.28 -0.4 549,035 - GFF845 0.28 -0.3
Or see this region's nucleotide sequence