Experiment: Ying_AminoAcid20 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF782 and GFF783 are separated by 0 nucleotides GFF783 and GFF784 are separated by 200 nucleotides
GFF782 - Lysyl-tRNA synthetase (class II) (EC 6.1.1.6), at 476,174 to 477,778
GFF782
GFF783 - sensor histidine kinase, at 477,779 to 479,476
GFF783
GFF784 - RNA polymerase sigma factor RpoH, at 479,677 to 480,624
GFF784
Position (kb) 477
478
479
480 Strain fitness (log2 ratio) -2
-1
0
1
2 at 478.344 kb on + strand, within GFF783 at 478.345 kb on - strand, within GFF783 at 478.345 kb on - strand, within GFF783 at 478.345 kb on - strand, within GFF783 at 478.390 kb on - strand, within GFF783 at 478.530 kb on + strand, within GFF783 at 478.531 kb on - strand, within GFF783 at 478.531 kb on - strand, within GFF783 at 478.531 kb on - strand, within GFF783 at 478.833 kb on + strand, within GFF783 at 478.834 kb on - strand, within GFF783 at 478.843 kb on - strand, within GFF783 at 478.843 kb on - strand, within GFF783 at 478.843 kb on - strand, within GFF783 at 478.921 kb on - strand, within GFF783 at 479.031 kb on + strand, within GFF783 at 479.031 kb on + strand, within GFF783 at 479.031 kb on + strand, within GFF783 at 479.031 kb on + strand, within GFF783 at 479.031 kb on + strand, within GFF783 at 479.032 kb on - strand, within GFF783 at 479.032 kb on - strand, within GFF783 at 479.032 kb on - strand, within GFF783 at 479.032 kb on - strand, within GFF783 at 479.161 kb on - strand, within GFF783 at 479.367 kb on + strand at 479.367 kb on + strand at 479.368 kb on - strand at 479.368 kb on - strand at 479.368 kb on - strand at 479.368 kb on - strand at 479.684 kb on + strand at 479.684 kb on + strand at 479.684 kb on + strand at 479.684 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2 remove 478,344 + GFF783 0.33 -0.3 478,345 - GFF783 0.33 +0.4 478,345 - GFF783 0.33 -0.3 478,345 - GFF783 0.33 +0.1 478,390 - GFF783 0.36 -0.1 478,530 + GFF783 0.44 +0.0 478,531 - GFF783 0.44 -0.2 478,531 - GFF783 0.44 +1.1 478,531 - GFF783 0.44 +0.2 478,833 + GFF783 0.62 +0.3 478,834 - GFF783 0.62 +0.1 478,843 - GFF783 0.63 -2.0 478,843 - GFF783 0.63 +0.0 478,843 - GFF783 0.63 -0.3 478,921 - GFF783 0.67 +0.9 479,031 + GFF783 0.74 +1.9 479,031 + GFF783 0.74 +0.6 479,031 + GFF783 0.74 +1.1 479,031 + GFF783 0.74 +0.4 479,031 + GFF783 0.74 +0.1 479,032 - GFF783 0.74 -0.7 479,032 - GFF783 0.74 -0.1 479,032 - GFF783 0.74 +0.4 479,032 - GFF783 0.74 -0.1 479,161 - GFF783 0.81 +0.1 479,367 + +0.1 479,367 + +0.2 479,368 - -0.3 479,368 - -0.1 479,368 - +0.7 479,368 - -0.2 479,684 + -0.1 479,684 + -0.2 479,684 + -0.6 479,684 + +0.9
Or see this region's nucleotide sequence