Experiment: Ying_AminoAcid20 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF779 and GFF780 are separated by 13 nucleotides GFF780 and GFF781 are separated by 16 nucleotides GFF781 and GFF782 are separated by 37 nucleotides
GFF779 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 473,534 to 474,619
GFF779
GFF780 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 474,633 to 475,403
GFF780
GFF781 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 475,420 to 476,136
GFF781
GFF782 - Lysyl-tRNA synthetase (class II) (EC 6.1.1.6), at 476,174 to 477,778
GFF782
Position (kb) 474
475
476 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 473.663 kb on + strand, within GFF779 at 473.663 kb on + strand, within GFF779 at 473.664 kb on - strand, within GFF779 at 473.664 kb on - strand, within GFF779 at 473.664 kb on - strand, within GFF779 at 473.664 kb on - strand, within GFF779 at 473.753 kb on + strand, within GFF779 at 473.753 kb on + strand, within GFF779 at 473.753 kb on + strand, within GFF779 at 473.754 kb on - strand, within GFF779 at 473.754 kb on - strand, within GFF779 at 473.754 kb on - strand, within GFF779 at 473.834 kb on + strand, within GFF779 at 473.835 kb on - strand, within GFF779 at 473.927 kb on + strand, within GFF779 at 474.090 kb on - strand, within GFF779 at 474.113 kb on + strand, within GFF779 at 474.116 kb on + strand, within GFF779 at 474.116 kb on + strand, within GFF779 at 474.117 kb on - strand, within GFF779 at 474.119 kb on + strand, within GFF779 at 474.119 kb on + strand, within GFF779 at 474.795 kb on + strand, within GFF780 at 475.050 kb on + strand, within GFF780 at 475.050 kb on + strand, within GFF780 at 475.098 kb on + strand, within GFF780 at 475.099 kb on - strand, within GFF780 at 475.380 kb on + strand at 475.463 kb on - strand at 475.470 kb on + strand at 475.735 kb on + strand, within GFF781 at 475.735 kb on + strand, within GFF781 at 475.736 kb on - strand, within GFF781 at 476.044 kb on + strand, within GFF781 at 476.122 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2 remove 473,663 + GFF779 0.12 -0.1 473,663 + GFF779 0.12 +2.5 473,664 - GFF779 0.12 +3.2 473,664 - GFF779 0.12 +3.8 473,664 - GFF779 0.12 +2.8 473,664 - GFF779 0.12 +4.4 473,753 + GFF779 0.20 +0.7 473,753 + GFF779 0.20 +2.5 473,753 + GFF779 0.20 +2.6 473,754 - GFF779 0.20 +2.7 473,754 - GFF779 0.20 +2.3 473,754 - GFF779 0.20 +3.0 473,834 + GFF779 0.28 +2.3 473,835 - GFF779 0.28 +3.2 473,927 + GFF779 0.36 +2.8 474,090 - GFF779 0.51 +1.9 474,113 + GFF779 0.53 +3.0 474,116 + GFF779 0.54 +1.7 474,116 + GFF779 0.54 +3.9 474,117 - GFF779 0.54 +3.0 474,119 + GFF779 0.54 +2.8 474,119 + GFF779 0.54 +3.2 474,795 + GFF780 0.21 +2.8 475,050 + GFF780 0.54 +4.0 475,050 + GFF780 0.54 +2.8 475,098 + GFF780 0.60 +3.4 475,099 - GFF780 0.60 +1.6 475,380 + +2.6 475,463 - +3.4 475,470 + +0.4 475,735 + GFF781 0.44 +3.8 475,735 + GFF781 0.44 +3.0 475,736 - GFF781 0.44 +2.7 476,044 + GFF781 0.87 +4.1 476,122 + +4.0
Or see this region's nucleotide sequence