Experiment: Ying_AminoAcid20 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF721 and GFF722 are separated by 7 nucleotides GFF722 and GFF723 are separated by 6 nucleotides GFF723 and GFF724 are separated by 41 nucleotides
GFF721 - Similar to eukaryotic Peptidyl prolyl 4-hydroxylase, alpha subunit (EC 1.14.11.2), at 401,293 to 402,177
GFF721
GFF722 - NADPH dependent preQ0 reductase (EC 1.7.1.13), at 402,185 to 403,036
GFF722
GFF723 - Deacetylases, including yeast histone deacetylase and acetoin utilization protein, at 403,043 to 404,110
GFF723
GFF724 - Ornithine cyclodeaminase (EC 4.3.1.12), at 404,152 to 405,231
GFF724
Position (kb) 403
404
405 Strain fitness (log2 ratio) -2
-1
0
1
2 at 402.070 kb on + strand, within GFF721 at 402.070 kb on + strand, within GFF721 at 402.233 kb on + strand at 402.233 kb on + strand at 402.233 kb on + strand at 402.234 kb on - strand at 402.246 kb on - strand at 402.455 kb on + strand, within GFF722 at 402.665 kb on + strand, within GFF722 at 402.665 kb on + strand, within GFF722 at 402.665 kb on + strand, within GFF722 at 402.666 kb on - strand, within GFF722 at 402.836 kb on + strand, within GFF722 at 402.836 kb on + strand, within GFF722 at 402.837 kb on - strand, within GFF722 at 402.837 kb on - strand, within GFF722 at 402.893 kb on + strand, within GFF722 at 402.893 kb on + strand, within GFF722 at 402.893 kb on + strand, within GFF722 at 402.893 kb on + strand, within GFF722 at 402.894 kb on - strand, within GFF722 at 402.894 kb on - strand, within GFF722 at 402.894 kb on - strand, within GFF722 at 402.894 kb on - strand, within GFF722 at 402.894 kb on - strand, within GFF722 at 402.938 kb on + strand, within GFF722 at 402.938 kb on + strand, within GFF722 at 402.938 kb on + strand, within GFF722 at 402.938 kb on + strand, within GFF722 at 402.939 kb on - strand, within GFF722 at 402.939 kb on - strand, within GFF722 at 402.939 kb on - strand, within GFF722 at 402.939 kb on - strand, within GFF722 at 402.939 kb on - strand, within GFF722 at 402.948 kb on - strand, within GFF722 at 403.401 kb on + strand, within GFF723 at 403.488 kb on + strand, within GFF723 at 403.489 kb on - strand, within GFF723 at 403.489 kb on - strand, within GFF723 at 403.489 kb on - strand, within GFF723 at 403.892 kb on + strand, within GFF723 at 403.892 kb on + strand, within GFF723 at 403.893 kb on - strand, within GFF723 at 403.893 kb on - strand, within GFF723 at 403.893 kb on - strand, within GFF723 at 403.897 kb on - strand, within GFF723 at 404.135 kb on + strand at 404.303 kb on + strand, within GFF724 at 404.303 kb on + strand, within GFF724 at 404.304 kb on - strand, within GFF724 at 404.304 kb on - strand, within GFF724 at 404.996 kb on + strand, within GFF724 at 404.996 kb on + strand, within GFF724 at 404.997 kb on - strand, within GFF724 at 404.997 kb on - strand, within GFF724 at 404.997 kb on - strand, within GFF724 at 404.997 kb on - strand, within GFF724 at 404.997 kb on - strand, within GFF724 at 405.008 kb on + strand, within GFF724 at 405.009 kb on - strand, within GFF724 at 405.009 kb on - strand, within GFF724 at 405.105 kb on - strand, within GFF724
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2 remove 402,070 + GFF721 0.88 +0.2 402,070 + GFF721 0.88 -0.5 402,233 + +0.0 402,233 + +0.2 402,233 + +0.6 402,234 - -1.0 402,246 - -0.9 402,455 + GFF722 0.32 -0.1 402,665 + GFF722 0.56 +0.1 402,665 + GFF722 0.56 +0.9 402,665 + GFF722 0.56 +0.1 402,666 - GFF722 0.56 -1.2 402,836 + GFF722 0.76 +1.3 402,836 + GFF722 0.76 -0.1 402,837 - GFF722 0.77 -0.5 402,837 - GFF722 0.77 +0.3 402,893 + GFF722 0.83 +0.5 402,893 + GFF722 0.83 -0.3 402,893 + GFF722 0.83 -0.2 402,893 + GFF722 0.83 -0.3 402,894 - GFF722 0.83 -0.2 402,894 - GFF722 0.83 +0.3 402,894 - GFF722 0.83 -0.9 402,894 - GFF722 0.83 -0.3 402,894 - GFF722 0.83 -0.6 402,938 + GFF722 0.88 -0.2 402,938 + GFF722 0.88 -0.8 402,938 + GFF722 0.88 +0.1 402,938 + GFF722 0.88 +0.6 402,939 - GFF722 0.88 +0.7 402,939 - GFF722 0.88 -0.2 402,939 - GFF722 0.88 +0.2 402,939 - GFF722 0.88 -0.5 402,939 - GFF722 0.88 -0.5 402,948 - GFF722 0.90 +0.0 403,401 + GFF723 0.34 +0.1 403,488 + GFF723 0.42 +1.9 403,489 - GFF723 0.42 +0.9 403,489 - GFF723 0.42 +0.1 403,489 - GFF723 0.42 -1.5 403,892 + GFF723 0.79 -0.0 403,892 + GFF723 0.79 -0.2 403,893 - GFF723 0.80 +0.2 403,893 - GFF723 0.80 +0.8 403,893 - GFF723 0.80 -1.8 403,897 - GFF723 0.80 -0.3 404,135 + +0.1 404,303 + GFF724 0.14 -1.1 404,303 + GFF724 0.14 -0.2 404,304 - GFF724 0.14 +1.5 404,304 - GFF724 0.14 +1.0 404,996 + GFF724 0.78 -0.4 404,996 + GFF724 0.78 -1.5 404,997 - GFF724 0.78 -1.5 404,997 - GFF724 0.78 -1.1 404,997 - GFF724 0.78 -0.2 404,997 - GFF724 0.78 +0.3 404,997 - GFF724 0.78 -1.6 405,008 + GFF724 0.79 +1.5 405,009 - GFF724 0.79 -2.6 405,009 - GFF724 0.79 -1.1 405,105 - GFF724 0.88 -0.8
Or see this region's nucleotide sequence