Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF696

Experiment: Ying_AminoAcid20 rep B; time point 2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF694 and GFF695 are separated by 39 nucleotidesGFF695 and GFF696 overlap by 20 nucleotidesGFF696 and GFF697 are separated by 1 nucleotides GFF694 - hypothetical protein, at 374,463 to 374,696 GFF694 GFF695 - Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion, at 374,736 to 375,476 GFF695 GFF696 - Probable transmembrane protein, at 375,457 to 376,137 GFF696 GFF697 - Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA, at 376,139 to 377,302 GFF697 Position (kb) 375 376 377Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 374.464 kb on + strandat 374.509 kb on + strand, within GFF694at 374.509 kb on + strand, within GFF694at 374.632 kb on + strand, within GFF694at 374.632 kb on + strand, within GFF694at 374.632 kb on + strand, within GFF694at 374.632 kb on + strand, within GFF694at 374.632 kb on + strand, within GFF694at 374.633 kb on - strand, within GFF694at 374.633 kb on - strand, within GFF694at 374.633 kb on - strand, within GFF694at 374.633 kb on - strand, within GFF694at 374.689 kb on + strandat 374.689 kb on + strandat 374.689 kb on + strandat 374.690 kb on - strandat 374.690 kb on - strandat 374.690 kb on - strandat 375.187 kb on + strand, within GFF695at 375.187 kb on + strand, within GFF695at 375.187 kb on + strand, within GFF695at 375.187 kb on + strand, within GFF695at 375.188 kb on - strand, within GFF695at 375.188 kb on - strand, within GFF695at 375.188 kb on - strand, within GFF695at 375.188 kb on - strand, within GFF695at 375.188 kb on - strand, within GFF695at 375.188 kb on - strand, within GFF695at 375.190 kb on - strand, within GFF695at 375.230 kb on + strand, within GFF695at 375.230 kb on + strand, within GFF695at 375.366 kb on + strand, within GFF695at 375.366 kb on + strand, within GFF695at 375.411 kb on + strandat 375.411 kb on + strandat 375.411 kb on + strandat 375.411 kb on + strandat 375.611 kb on - strand, within GFF696at 375.619 kb on + strand, within GFF696at 375.619 kb on + strand, within GFF696at 375.619 kb on + strand, within GFF696at 375.619 kb on + strand, within GFF696at 375.619 kb on + strand, within GFF696at 375.619 kb on + strand, within GFF696at 375.619 kb on + strand, within GFF696at 375.619 kb on + strand, within GFF696at 375.620 kb on - strand, within GFF696at 375.622 kb on + strand, within GFF696at 375.622 kb on + strand, within GFF696at 375.622 kb on + strand, within GFF696at 375.622 kb on + strand, within GFF696at 375.622 kb on + strand, within GFF696at 375.622 kb on + strand, within GFF696at 375.623 kb on - strand, within GFF696at 375.623 kb on - strand, within GFF696at 375.623 kb on - strand, within GFF696at 375.652 kb on + strand, within GFF696at 375.652 kb on + strand, within GFF696at 375.652 kb on + strand, within GFF696at 375.652 kb on + strand, within GFF696at 375.653 kb on - strand, within GFF696at 375.805 kb on + strand, within GFF696at 375.805 kb on + strand, within GFF696at 375.806 kb on - strand, within GFF696at 376.003 kb on + strand, within GFF696at 376.003 kb on + strand, within GFF696at 376.003 kb on + strand, within GFF696at 376.003 kb on + strand, within GFF696at 376.003 kb on + strand, within GFF696at 376.003 kb on + strand, within GFF696at 376.003 kb on + strand, within GFF696at 376.004 kb on - strand, within GFF696at 376.004 kb on - strand, within GFF696at 376.157 kb on + strandat 376.157 kb on + strandat 376.157 kb on + strandat 376.594 kb on - strand, within GFF697at 376.594 kb on - strand, within GFF697at 376.721 kb on + strand, within GFF697at 376.847 kb on + strand, within GFF697at 376.847 kb on + strand, within GFF697at 376.847 kb on + strand, within GFF697at 376.848 kb on - strand, within GFF697at 376.848 kb on - strand, within GFF697at 376.848 kb on - strand, within GFF697at 376.997 kb on + strand, within GFF697at 376.997 kb on + strand, within GFF697at 376.998 kb on - strand, within GFF697at 377.018 kb on + strand, within GFF697at 377.018 kb on + strand, within GFF697at 377.019 kb on - strand, within GFF697

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2
remove
374,464 + -0.2
374,509 + GFF694 0.20 -0.1
374,509 + GFF694 0.20 -0.2
374,632 + GFF694 0.72 -0.3
374,632 + GFF694 0.72 +0.3
374,632 + GFF694 0.72 +0.2
374,632 + GFF694 0.72 +0.6
374,632 + GFF694 0.72 -1.5
374,633 - GFF694 0.73 -0.2
374,633 - GFF694 0.73 +1.0
374,633 - GFF694 0.73 +0.9
374,633 - GFF694 0.73 -0.4
374,689 + -0.6
374,689 + -0.2
374,689 + +0.2
374,690 - -0.1
374,690 - -1.3
374,690 - +0.6
375,187 + GFF695 0.61 -1.1
375,187 + GFF695 0.61 -1.1
375,187 + GFF695 0.61 -2.3
375,187 + GFF695 0.61 -1.3
375,188 - GFF695 0.61 -0.5
375,188 - GFF695 0.61 +0.5
375,188 - GFF695 0.61 -0.3
375,188 - GFF695 0.61 -1.6
375,188 - GFF695 0.61 -1.9
375,188 - GFF695 0.61 -1.3
375,190 - GFF695 0.61 -0.9
375,230 + GFF695 0.67 -0.6
375,230 + GFF695 0.67 -1.3
375,366 + GFF695 0.85 -1.3
375,366 + GFF695 0.85 -1.9
375,411 + +0.5
375,411 + -1.5
375,411 + -1.3
375,411 + +0.9
375,611 - GFF696 0.23 -0.6
375,619 + GFF696 0.24 -0.6
375,619 + GFF696 0.24 -2.0
375,619 + GFF696 0.24 -2.6
375,619 + GFF696 0.24 -3.3
375,619 + GFF696 0.24 -2.1
375,619 + GFF696 0.24 -1.8
375,619 + GFF696 0.24 -0.9
375,619 + GFF696 0.24 -0.6
375,620 - GFF696 0.24 -0.9
375,622 + GFF696 0.24 -2.9
375,622 + GFF696 0.24 -1.3
375,622 + GFF696 0.24 -1.7
375,622 + GFF696 0.24 -0.9
375,622 + GFF696 0.24 -0.8
375,622 + GFF696 0.24 -1.4
375,623 - GFF696 0.24 +0.1
375,623 - GFF696 0.24 -1.7
375,623 - GFF696 0.24 -1.3
375,652 + GFF696 0.29 -3.2
375,652 + GFF696 0.29 -2.1
375,652 + GFF696 0.29 +0.1
375,652 + GFF696 0.29 -4.3
375,653 - GFF696 0.29 -1.0
375,805 + GFF696 0.51 -2.0
375,805 + GFF696 0.51 +0.7
375,806 - GFF696 0.51 +0.2
376,003 + GFF696 0.80 -0.3
376,003 + GFF696 0.80 -2.6
376,003 + GFF696 0.80 -1.5
376,003 + GFF696 0.80 -1.0
376,003 + GFF696 0.80 -0.4
376,003 + GFF696 0.80 -0.2
376,003 + GFF696 0.80 -1.9
376,004 - GFF696 0.80 -1.5
376,004 - GFF696 0.80 -1.1
376,157 + -3.5
376,157 + -2.1
376,157 + -1.9
376,594 - GFF697 0.39 -2.5
376,594 - GFF697 0.39 -2.0
376,721 + GFF697 0.50 -2.3
376,847 + GFF697 0.61 -1.8
376,847 + GFF697 0.61 -2.5
376,847 + GFF697 0.61 -2.0
376,848 - GFF697 0.61 -1.3
376,848 - GFF697 0.61 -0.5
376,848 - GFF697 0.61 -1.6
376,997 + GFF697 0.74 +0.7
376,997 + GFF697 0.74 -2.6
376,998 - GFF697 0.74 -0.4
377,018 + GFF697 0.76 -1.3
377,018 + GFF697 0.76 -1.1
377,019 - GFF697 0.76 -2.7

Or see this region's nucleotide sequence