Experiment: Ying_AminoAcid20 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF612 and GFF613 are separated by 6 nucleotides GFF613 and GFF614 are separated by 91 nucleotides GFF614 and GFF615 are separated by 94 nucleotides
GFF612 - Putative sensor-like histidine kinase YfhK, at 288,610 to 290,028
GFF612
GFF613 - tRNA-i(6)A37 methylthiotransferase, at 290,035 to 291,390
GFF613
GFF614 - COG0012: Predicted GTPase, probable translation, at 291,482 to 291,868
GFF614
GFF615 - Transcriptional regulator, TetR family, at 291,963 to 292,700
GFF615
Position (kb) 290
291
292 Strain fitness (log2 ratio) -1
0
1 at 289.710 kb on - strand, within GFF612 at 289.710 kb on - strand, within GFF612 at 290.537 kb on + strand, within GFF613 at 290.538 kb on - strand, within GFF613 at 290.538 kb on - strand, within GFF613 at 290.538 kb on - strand, within GFF613 at 290.538 kb on - strand, within GFF613 at 290.639 kb on + strand, within GFF613 at 290.640 kb on - strand, within GFF613 at 290.688 kb on - strand, within GFF613 at 290.688 kb on - strand, within GFF613 at 290.723 kb on + strand, within GFF613 at 290.724 kb on - strand, within GFF613 at 290.724 kb on - strand, within GFF613 at 290.724 kb on - strand, within GFF613 at 290.724 kb on - strand, within GFF613 at 290.724 kb on - strand, within GFF613 at 290.894 kb on + strand, within GFF613 at 290.895 kb on - strand, within GFF613 at 290.895 kb on - strand, within GFF613 at 290.909 kb on + strand, within GFF613 at 290.909 kb on + strand, within GFF613 at 290.909 kb on + strand, within GFF613 at 290.910 kb on - strand, within GFF613 at 290.910 kb on - strand, within GFF613 at 290.918 kb on + strand, within GFF613 at 290.918 kb on + strand, within GFF613 at 290.918 kb on + strand, within GFF613 at 291.104 kb on + strand, within GFF613 at 291.104 kb on + strand, within GFF613 at 291.105 kb on - strand, within GFF613 at 291.296 kb on + strand at 291.296 kb on + strand at 291.296 kb on + strand at 291.528 kb on + strand, within GFF614 at 291.528 kb on + strand, within GFF614 at 291.528 kb on + strand, within GFF614 at 291.529 kb on - strand, within GFF614 at 291.529 kb on - strand, within GFF614 at 291.529 kb on - strand, within GFF614 at 291.529 kb on - strand, within GFF614 at 291.624 kb on + strand, within GFF614 at 291.624 kb on + strand, within GFF614 at 291.624 kb on + strand, within GFF614 at 291.625 kb on - strand, within GFF614 at 291.625 kb on - strand, within GFF614 at 291.871 kb on + strand at 291.871 kb on + strand at 291.871 kb on + strand at 291.871 kb on + strand at 291.871 kb on + strand at 291.871 kb on + strand at 291.872 kb on - strand at 291.872 kb on - strand at 291.872 kb on - strand at 291.872 kb on - strand at 291.872 kb on - strand at 291.872 kb on - strand at 291.872 kb on - strand at 291.872 kb on - strand at 292.027 kb on + strand at 292.027 kb on + strand at 292.027 kb on + strand at 292.028 kb on - strand at 292.028 kb on - strand at 292.028 kb on - strand at 292.255 kb on + strand, within GFF615 at 292.255 kb on + strand, within GFF615 at 292.256 kb on - strand, within GFF615 at 292.256 kb on - strand, within GFF615
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2 remove 289,710 - GFF612 0.78 +0.2 289,710 - GFF612 0.78 -0.2 290,537 + GFF613 0.37 +0.0 290,538 - GFF613 0.37 +0.5 290,538 - GFF613 0.37 -0.5 290,538 - GFF613 0.37 +0.2 290,538 - GFF613 0.37 -0.8 290,639 + GFF613 0.45 -0.1 290,640 - GFF613 0.45 -0.2 290,688 - GFF613 0.48 -0.4 290,688 - GFF613 0.48 -0.8 290,723 + GFF613 0.51 +0.5 290,724 - GFF613 0.51 -0.3 290,724 - GFF613 0.51 -0.6 290,724 - GFF613 0.51 -0.4 290,724 - GFF613 0.51 +0.0 290,724 - GFF613 0.51 -1.3 290,894 + GFF613 0.63 +1.0 290,895 - GFF613 0.63 +0.5 290,895 - GFF613 0.63 -0.3 290,909 + GFF613 0.64 -0.1 290,909 + GFF613 0.64 -0.5 290,909 + GFF613 0.64 -0.5 290,910 - GFF613 0.65 +0.3 290,910 - GFF613 0.65 +0.7 290,918 + GFF613 0.65 +0.3 290,918 + GFF613 0.65 -0.1 290,918 + GFF613 0.65 +0.9 291,104 + GFF613 0.79 -0.4 291,104 + GFF613 0.79 -0.5 291,105 - GFF613 0.79 -0.2 291,296 + +0.3 291,296 + -1.4 291,296 + -0.4 291,528 + GFF614 0.12 +0.5 291,528 + GFF614 0.12 -0.3 291,528 + GFF614 0.12 +0.5 291,529 - GFF614 0.12 +0.0 291,529 - GFF614 0.12 +0.1 291,529 - GFF614 0.12 +0.1 291,529 - GFF614 0.12 +0.6 291,624 + GFF614 0.37 -0.4 291,624 + GFF614 0.37 +1.0 291,624 + GFF614 0.37 -0.1 291,625 - GFF614 0.37 -1.0 291,625 - GFF614 0.37 +0.3 291,871 + +0.4 291,871 + +1.2 291,871 + -0.2 291,871 + +0.0 291,871 + +0.2 291,871 + +0.2 291,872 - -0.3 291,872 - -0.2 291,872 - -0.3 291,872 - -0.2 291,872 - +0.1 291,872 - -0.0 291,872 - -0.3 291,872 - +0.9 292,027 + -0.5 292,027 + -0.2 292,027 + +0.3 292,028 - -0.5 292,028 - +0.7 292,028 - -0.1 292,255 + GFF615 0.40 +0.3 292,255 + GFF615 0.40 +0.2 292,256 - GFF615 0.40 -1.2 292,256 - GFF615 0.40 -0.1
Or see this region's nucleotide sequence