Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5745

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
2,770,110	+		GFF5743	0.78	-0.1
2,770,383	+				+0.5
2,770,384	-				-2.0
2,770,386	+				+0.2
2,770,386	+				-1.3
2,770,386	+				-0.5
2,770,387	-				-1.1
2,770,395	+				+0.6
2,770,452	+		GFF5744	0.18	+0.0
2,770,452	+		GFF5744	0.18	-0.2
2,770,453	-		GFF5744	0.18	+0.1
2,770,453	-		GFF5744	0.18	+0.9
2,770,453	-		GFF5744	0.18	+0.4
2,770,965	+		GFF5745	0.10	+0.7
2,771,185	+				+0.2
2,771,186	-				-0.3
2,771,221	+				-0.1
2,771,221	+				-0.9
2,771,221	+				+0.3
2,771,884	+		GFF5746	0.57	-1.1
2,771,884	+		GFF5746	0.57	+0.5
2,771,949	+		GFF5746	0.62	+0.3
2,771,950	-		GFF5746	0.63	-0.5
2,772,041	-		GFF5746	0.70	-1.1
2,772,041	-		GFF5746	0.70	-0.0
2,772,041	-		GFF5746	0.70	+0.1