Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5676

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
2,696,898	+		GFF5674	0.71	+0.6
2,696,899	-		GFF5674	0.72	+0.1
2,696,899	-		GFF5674	0.72	+0.4
2,696,955	+				-0.5
2,696,956	-				-0.4
2,697,008	+				+0.3
2,697,008	+				-0.1
2,697,009	-				+0.1
2,697,185	+		GFF5675	0.21	+0.2
2,697,185	+		GFF5675	0.21	+0.8
2,697,186	-		GFF5675	0.21	-0.2
2,697,186	-		GFF5675	0.21	-0.3
2,697,186	-		GFF5675	0.21	-0.1
2,697,186	-		GFF5675	0.21	+0.7
2,697,257	+		GFF5675	0.29	+0.7
2,697,258	-		GFF5675	0.29	-0.6
2,697,384	-		GFF5675	0.44	-0.3
2,698,028	+		GFF5676	0.19	-0.7
2,698,029	-		GFF5676	0.19	+0.9
2,698,041	-		GFF5676	0.21	-0.0
2,698,067	+		GFF5676	0.24	+0.2
2,698,274	+		GFF5676	0.52	+0.4
2,698,523	+		GFF5676	0.84	+0.0
2,698,524	-		GFF5676	0.84	+0.4
2,698,623	-				+0.0
2,698,662	-				+0.0
2,698,728	+				-0.1
2,698,728	+				+0.4
2,698,729	-				-0.8
2,698,900	-		GFF5677	0.14	-0.5
2,699,245	-		GFF5677	0.42	-1.0
2,699,307	+		GFF5677	0.47	-0.6
2,699,577	+		GFF5677	0.69	-0.4
2,699,578	-		GFF5677	0.69	-1.9