Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5595

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
2,609,926	+		GFF5594	0.53	+0.1
2,609,926	+		GFF5594	0.53	-0.0
2,609,927	-		GFF5594	0.53	+0.2
2,610,211	+		GFF5594	0.70	+0.1
2,610,211	+		GFF5594	0.70	+0.1
2,610,212	-		GFF5594	0.70	-1.8
2,610,440	-		GFF5594	0.84	-0.3
2,610,691	+				-0.9
2,610,692	-				-0.8
2,610,738	-				+0.7
2,610,759	+				-0.5
2,611,198	+		GFF5595	0.49	-0.1
2,611,199	-		GFF5595	0.49	+0.4
2,611,228	+		GFF5595	0.52	-0.3
2,611,228	+		GFF5595	0.52	+0.4
2,611,228	+		GFF5595	0.52	-0.1
2,611,228	+		GFF5595	0.52	+0.9
2,611,229	-		GFF5595	0.52	+0.2
2,611,229	-		GFF5595	0.52	-0.4
2,611,229	-		GFF5595	0.52	+0.8
2,611,229	-		GFF5595	0.52	-0.2
2,611,276	+		GFF5595	0.58	+0.6
2,611,276	+		GFF5595	0.58	+0.8
2,611,277	-		GFF5595	0.58	-0.3
2,612,080	+				-1.0
2,612,081	-				+0.2
2,612,339	+		GFF5597	0.12	-1.6
2,612,357	+		GFF5597	0.13	-0.6