Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5547

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
2,553,027	+				-0.9
2,553,027	+				+0.2
2,553,028	-				+0.6
2,553,172	+				-0.1
2,553,173	-				-0.2
2,553,307	+				+1.1
2,553,307	+				-0.1
2,553,307	+				+0.8
2,553,308	-				+0.0
2,553,308	-				-0.5
2,553,311	+				+0.4
2,553,311	+				+0.2
2,553,350	-				-0.4
2,553,673	-		GFF5546	0.60	-0.3
2,553,784	+		GFF5546	0.81	-0.3
2,553,785	-		GFF5546	0.81	+0.1
2,553,785	-		GFF5546	0.81	-0.2
2,553,890	+				+0.4
2,553,891	-				+0.2
2,553,932	+				-0.5
2,553,932	+				-0.0
2,553,933	-				+0.5
2,554,188	+		GFF5547	0.21	-0.3
2,554,227	-		GFF5547	0.24	+0.3
2,554,241	+		GFF5547	0.25	-0.3
2,554,241	+		GFF5547	0.25	-0.7
2,554,242	-		GFF5547	0.25	+0.3
2,554,289	+		GFF5547	0.28	+0.1
2,554,328	+		GFF5547	0.31	-0.0
2,554,349	+		GFF5547	0.32	+0.0
2,554,350	-		GFF5547	0.33	+0.4
2,554,403	+		GFF5547	0.36	+0.3
2,554,403	+		GFF5547	0.36	+0.7
2,554,404	-		GFF5547	0.36	-1.0
2,554,404	-		GFF5547	0.36	-0.1
2,554,404	-		GFF5547	0.36	+0.3
2,554,404	-		GFF5547	0.36	+0.5
2,554,404	-		GFF5547	0.36	-0.4
2,554,501	+		GFF5547	0.44	-0.5
2,554,502	-		GFF5547	0.44	+0.4
2,554,550	+		GFF5547	0.47	+0.0
2,554,551	-		GFF5547	0.47	+0.6
2,554,551	-		GFF5547	0.47	+0.2
2,554,551	-		GFF5547	0.47	+0.9
2,554,551	-		GFF5547	0.47	+0.2
2,554,551	-		GFF5547	0.47	-0.4
2,554,551	-		GFF5547	0.47	+0.0
2,554,588	+		GFF5547	0.50	-0.4
2,554,730	+		GFF5547	0.60	-0.5
2,554,730	+		GFF5547	0.60	+0.4
2,554,730	+		GFF5547	0.60	-0.0
2,554,730	-		GFF5547	0.60	+0.4
2,554,731	-		GFF5547	0.60	-0.2
2,554,731	-		GFF5547	0.60	+0.4
2,554,731	-		GFF5547	0.60	+0.1
2,554,731	-		GFF5547	0.60	+0.9
2,554,757	+		GFF5547	0.62	-0.1
2,554,757	+		GFF5547	0.62	+0.8
2,554,757	+		GFF5547	0.62	+0.4
2,554,757	+		GFF5547	0.62	-0.4
2,554,758	-		GFF5547	0.62	-0.0
2,554,839	-		GFF5547	0.68	+0.6
2,554,839	-		GFF5547	0.68	-0.1
2,554,979	+		GFF5547	0.79	+0.5
2,554,980	-		GFF5547	0.79	+0.3
2,554,982	+		GFF5547	0.79	-0.2
2,554,982	+		GFF5547	0.79	+0.8
2,554,982	+		GFF5547	0.79	+0.3
2,554,982	+		GFF5547	0.79	+0.8
2,554,982	+		GFF5547	0.79	+0.4
2,554,982	+		GFF5547	0.79	+0.6
2,554,982	+		GFF5547	0.79	-0.7
2,554,983	-		GFF5547	0.79	+1.4
2,554,983	-		GFF5547	0.79	+0.0
2,554,983	-		GFF5547	0.79	-0.1
2,554,983	-		GFF5547	0.79	+0.2
2,554,983	-		GFF5547	0.79	+0.4
2,554,983	-		GFF5547	0.79	+0.5
2,554,983	-		GFF5547	0.79	+0.6
2,554,983	-		GFF5547	0.79	-1.1
2,554,983	-		GFF5547	0.79	+0.1
2,554,992	-		GFF5547	0.79	-0.4
2,555,043	-		GFF5547	0.83	-0.4
2,555,043	-		GFF5547	0.83	-0.2
2,555,043	-		GFF5547	0.83	+0.0
2,555,087	+		GFF5547	0.86	+0.5
2,555,088	-		GFF5547	0.86	+0.4
2,555,088	-		GFF5547	0.86	-0.1
2,555,093	+		GFF5547	0.87	-0.2
2,555,094	-		GFF5547	0.87	+0.1
2,555,094	-		GFF5547	0.87	+0.9
2,555,094	-		GFF5547	0.87	-0.7
2,555,094	-		GFF5547	0.87	-0.8
2,555,115	+		GFF5547	0.88	+0.4
2,555,115	+		GFF5547	0.88	+0.4
2,555,116	-		GFF5547	0.89	+0.2
2,555,183	+				-0.2
2,555,183	+				-0.1
2,555,184	-				-0.2
2,555,184	-				+0.2
2,555,201	+				+0.2
2,555,201	+				-0.6
2,555,201	+				+0.6
2,555,201	+				-0.2
2,555,202	-				-0.1
2,555,202	-				+0.6
2,555,271	-				-0.2
2,555,271	-				+0.1
2,555,557	+		GFF5548	0.39	-0.1
2,555,557	+		GFF5548	0.39	+0.3
2,555,558	-		GFF5548	0.39	+0.3
2,555,558	-		GFF5548	0.39	+0.6
2,555,636	+		GFF5548	0.50	+0.2
2,555,636	+		GFF5548	0.50	-0.1
2,555,636	+		GFF5548	0.50	-0.5
2,555,636	+		GFF5548	0.50	+0.5
2,555,636	+		GFF5548	0.50	-0.1
2,555,636	+		GFF5548	0.50	+0.1
2,555,637	-		GFF5548	0.51	+0.4
2,555,637	-		GFF5548	0.51	-0.2
2,555,637	-		GFF5548	0.51	-0.2
2,555,637	-		GFF5548	0.51	+1.0
2,555,637	-		GFF5548	0.51	+0.2
2,555,637	-		GFF5548	0.51	+1.2
2,555,637	-		GFF5548	0.51	-0.1
2,555,637	-		GFF5548	0.51	+1.0
2,555,851	+		GFF5548	0.81	+0.0
2,555,851	+		GFF5548	0.81	-0.3
2,555,851	+		GFF5548	0.81	-0.2
2,555,852	-		GFF5548	0.81	-0.2
2,555,852	-		GFF5548	0.81	-0.1
2,555,852	-		GFF5548	0.81	-0.9
2,555,852	-		GFF5548	0.81	+0.4
2,555,987	+				-0.1
2,555,987	+				+0.5
2,555,987	+				-0.2
2,555,988	-				-0.5
2,555,996	+				-0.5
2,555,996	+				+0.4
2,555,996	+				+0.1
2,555,996	+				-1.0
2,555,996	+				-0.2
2,555,996	+				+0.3
2,555,996	+				+0.4
2,555,996	+				-0.7
2,555,996	+				-0.2
2,555,996	+				+0.4
2,555,996	+				+0.5
2,555,996	+				+0.4
2,555,997	-				+0.3
2,555,997	-				-0.3
2,555,997	-				-0.7
2,555,997	-				+0.2
2,555,997	-				-0.0
2,555,997	-				+1.0
2,555,997	-				+0.3
2,555,997	-				+0.3
2,555,997	-				+0.1
2,555,997	-				-0.0
2,555,997	-				+0.7
2,555,997	-				-0.8
2,555,997	-				+0.3
2,555,997	-				+0.7
2,555,997	-				+0.5
2,555,998	+				+0.1
2,555,998	+				+2.0
2,555,998	+				-0.1
2,555,998	+				-0.1
2,555,998	+				-0.2
2,555,998	+				+0.7
2,555,998	+				-0.0
2,555,998	+				+0.0
2,555,998	+				+1.0
2,555,998	+				-0.8
2,555,999	-				+0.3
2,555,999	-				-0.3
2,555,999	-				+1.1
2,555,999	-				-0.2
2,555,999	-				+0.3
2,555,999	-				+0.4
2,556,004	-				-0.9
2,556,004	-				+0.3
2,556,004	-				-0.4
2,556,040	+				+0.1
2,556,040	+				+0.0
2,556,114	+				-0.4
2,556,114	+				-0.3
2,556,115	-				+0.5
2,556,148	+				-0.5
2,556,151	+				-0.3
2,556,152	-				-0.2
2,556,172	+				-1.2
2,556,173	-				-0.1
2,556,173	-				+0.4
2,556,197	+				+0.2
2,556,198	-				-0.6
2,556,198	-				+0.6
2,556,232	+				+0.2
2,556,232	+				-0.1
2,556,232	+				-0.2
2,556,233	-				-1.8
2,556,233	-				-0.2
2,556,233	-				+0.5
2,556,233	-				+0.1
2,556,233	-				-0.7
2,556,233	-				-0.6
2,556,233	-				+1.0
2,556,239	+				+1.7
2,556,239	+				-0.4
2,556,239	+				+0.1
2,556,239	+				-0.6
2,556,240	-				-0.2
2,556,240	-				+0.7
2,556,240	-				+0.7
2,556,240	-				-1.0
2,556,240	-				+0.0
2,556,240	-				-0.2
2,556,240	-				+0.5
2,556,240	-				-2.0