Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5476

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
2,477,218	+		GFF5474	0.68	+0.2
2,477,219	-		GFF5474	0.68	-0.4
2,477,236	+		GFF5474	0.70	+0.2
2,477,236	+		GFF5474	0.70	+0.6
2,477,237	-		GFF5474	0.70	-0.7
2,477,237	-		GFF5474	0.70	-0.3
2,477,320	+		GFF5474	0.78	-1.1
2,477,320	+		GFF5474	0.78	+0.7
2,477,320	+		GFF5474	0.78	+0.5
2,477,320	+		GFF5474	0.78	-0.4
2,477,404	+		GFF5474	0.85	-1.0
2,477,404	+		GFF5474	0.85	+0.1
2,477,404	+		GFF5474	0.85	+1.7
2,477,404	+		GFF5474	0.85	-0.6
2,477,404	+		GFF5474	0.85	+0.7
2,477,405	-		GFF5474	0.85	+0.4
2,477,405	-		GFF5474	0.85	+0.6
2,477,405	-		GFF5474	0.85	+0.0
2,477,524	-				-3.3
2,477,578	+				-1.4
2,477,578	+				+0.3
2,477,579	-				-0.7
2,477,579	-				+0.2
2,478,264	-				+0.9
2,478,525	-		GFF5476	0.26	+0.9
2,478,552	-		GFF5476	0.28	+1.7
2,479,172	+		GFF5476	0.71	-0.8
2,479,172	+		GFF5476	0.71	-0.3
2,479,173	-		GFF5476	0.71	-0.2
2,479,508	+				-1.7
2,479,509	-				+1.1
2,479,553	+				-0.1
2,479,836	+		GFF5477	0.68	+0.9
2,479,836	+		GFF5477	0.68	+0.6
2,479,837	-		GFF5477	0.68	+0.1
2,480,067	+		GFF5478	0.11	+0.4
2,480,067	+		GFF5478	0.11	-0.2
2,480,068	-		GFF5478	0.11	-0.4
2,480,172	+		GFF5478	0.22	-0.1
2,480,173	-		GFF5478	0.22	+0.2
2,480,476	-		GFF5478	0.53	+0.2
2,480,476	-		GFF5478	0.53	-0.8