Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5254

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
2,269,454	+		GFF5253	0.35	-0.3
2,269,455	-		GFF5253	0.35	+0.0
2,269,499	+		GFF5253	0.38	-0.3
2,269,533	-		GFF5253	0.40	+0.3
2,270,157	-		GFF5253	0.80	-1.1
2,270,384	+				+0.2
2,270,827	+		GFF5254	0.40	-0.3
2,270,828	-		GFF5254	0.40	-0.5
2,270,887	+		GFF5254	0.46	-1.2
2,270,887	+		GFF5254	0.46	+0.5
2,271,131	-		GFF5254	0.72	+0.8
2,271,389	+				+0.0
2,271,389	-				+0.2
2,271,741	-		GFF5255	0.35	+0.3
2,271,741	-		GFF5255	0.35	-1.5
2,271,741	-		GFF5255	0.35	-0.0
2,271,741	-		GFF5255	0.35	-0.0
2,271,896	+		GFF5255	0.51	+0.0
2,272,034	+		GFF5255	0.66	+0.7
2,272,034	+		GFF5255	0.66	-1.1
2,272,038	-		GFF5255	0.66	+0.0
2,272,202	+		GFF5255	0.84	-0.1
2,272,202	+		GFF5255	0.84	+0.1
2,272,203	-		GFF5255	0.84	+0.2
2,272,349	+				+0.6
2,272,349	+				-0.5
2,272,350	-				+0.6
2,272,350	-				+0.2
2,272,350	-				-1.3