Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5159

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
2,174,825	-		GFF5158	0.79	+1.4
2,174,906	-		GFF5158	0.81	+0.4
2,174,974	+		GFF5158	0.82	-0.3
2,174,974	+		GFF5158	0.82	-0.2
2,174,975	-		GFF5158	0.82	+0.3
2,174,975	-		GFF5158	0.82	-0.1
2,175,046	+		GFF5158	0.84	-0.1
2,175,091	+		GFF5158	0.85	-0.0
2,175,250	+		GFF5158	0.89	-1.0
2,175,251	-		GFF5158	0.89	-0.4
2,175,346	+				+0.2
2,175,347	-				+0.0
2,175,388	+				+0.4
2,175,389	-				-0.9
2,175,524	+				+0.8
2,175,524	+				-0.5
2,175,525	-				+0.0
2,175,794	+		GFF5159	0.11	-0.3
2,175,860	+		GFF5159	0.26	-1.2
2,175,860	+		GFF5159	0.26	+1.3
2,175,860	+		GFF5159	0.26	+0.0
2,175,932	+		GFF5159	0.43	-0.4
2,176,009	+		GFF5159	0.61	-1.9
2,176,050	-		GFF5159	0.71	-0.6
2,176,066	-		GFF5159	0.74	-0.2