Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5039

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
2,051,381	+				-0.6
2,051,382	-				+0.2
2,051,382	-				+0.1
2,051,635	+		GFF5039	0.25	-0.1
2,051,636	-		GFF5039	0.25	+0.1
2,051,686	+		GFF5039	0.31	+0.4
2,051,779	+		GFF5039	0.43	+0.5
2,051,780	-		GFF5039	0.43	-0.3
2,052,038	-		GFF5039	0.75	+0.3
2,052,104	-		GFF5039	0.83	+0.5
2,052,172	+				-0.8
2,052,173	-				+0.0
2,052,554	+		GFF5040	0.22	+0.4
2,052,554	+		GFF5040	0.22	+0.5
2,052,555	-		GFF5040	0.22	-2.0
2,052,555	-		GFF5040	0.22	+0.1
2,052,555	-		GFF5040	0.22	-0.3
2,052,720	-		GFF5040	0.34	+0.6
2,052,720	-		GFF5040	0.34	+0.9
2,052,720	-		GFF5040	0.34	+0.1
2,052,720	-		GFF5040	0.34	+0.9
2,052,842	+		GFF5040	0.43	+0.4
2,052,843	-		GFF5040	0.43	-0.2
2,052,998	+		GFF5040	0.55	-0.5
2,052,998	+		GFF5040	0.55	-0.2
2,052,999	-		GFF5040	0.55	-0.6
2,053,196	+		GFF5040	0.70	-0.1