Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4874

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
1,880,925	+				-0.2
1,880,925	+				+0.6
1,880,925	+				+0.1
1,881,176	+		GFF4873	0.27	-0.0
1,881,177	-		GFF4873	0.27	-0.2
1,881,353	+		GFF4873	0.50	-0.3
1,881,353	+		GFF4873	0.50	-0.3
1,881,353	+		GFF4873	0.50	-0.3
1,881,353	+		GFF4873	0.50	+0.4
1,881,353	+		GFF4873	0.50	+1.2
1,881,354	-		GFF4873	0.50	-1.7
1,881,354	-		GFF4873	0.50	-0.7
1,881,354	-		GFF4873	0.50	+0.3
1,881,401	+		GFF4873	0.57	+0.1
1,881,401	+		GFF4873	0.57	+0.1
1,881,401	+		GFF4873	0.57	+0.7
1,881,401	+		GFF4873	0.57	+0.3
1,881,401	+		GFF4873	0.57	-0.0
1,881,401	+		GFF4873	0.57	+0.1
1,881,401	+		GFF4873	0.57	+0.7
1,881,402	-		GFF4873	0.57	+0.9
1,881,402	-		GFF4873	0.57	+1.4
1,881,402	-		GFF4873	0.57	+0.6
1,881,402	-		GFF4873	0.57	-0.4
1,881,402	-		GFF4873	0.57	-0.6
1,881,402	-		GFF4873	0.57	-0.2
1,881,402	-		GFF4873	0.57	-0.1
1,881,581	+		GFF4873	0.80	-0.4
1,881,581	+		GFF4873	0.80	+0.6
1,881,581	+		GFF4873	0.80	+0.9
1,881,581	+		GFF4873	0.80	-0.3
1,881,582	-		GFF4873	0.80	-0.2
1,881,582	-		GFF4873	0.80	+0.9
1,881,582	-		GFF4873	0.80	-0.2
1,881,757	+				+0.5
1,881,758	-				+0.1
1,881,858	+		GFF4874	0.10	-2.0
1,881,859	-		GFF4874	0.11	-1.0
1,882,213	-		GFF4874	0.43	-1.0
1,882,653	+		GFF4874	0.83	-0.5
1,882,653	+		GFF4874	0.83	-0.4
1,882,653	+		GFF4874	0.83	-1.3
1,882,653	+		GFF4874	0.83	-1.0
1,882,654	-		GFF4874	0.83	+0.0
1,882,654	-		GFF4874	0.83	-0.3
1,882,654	-		GFF4874	0.83	-1.3
1,882,659	+		GFF4874	0.83	-0.5
1,882,659	+		GFF4874	0.83	-0.6
1,882,659	+		GFF4874	0.83	-1.3
1,882,660	-		GFF4874	0.84	-0.9
1,882,660	-		GFF4874	0.84	-0.1
1,882,660	-		GFF4874	0.84	+0.7
1,882,660	-		GFF4874	0.84	-0.5
1,882,660	-		GFF4874	0.84	-1.1
1,882,660	-		GFF4874	0.84	-1.3
1,882,660	-		GFF4874	0.84	-1.9
1,882,725	+		GFF4874	0.89	-1.2
1,882,725	+		GFF4874	0.89	-0.9
1,882,725	+		GFF4874	0.89	-0.7
1,882,821	+				-1.6
1,882,821	+				-1.7
1,882,822	-				-0.7
1,882,822	-				-1.2