Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4600

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
1,544,514	-		GFF4599	0.47	+1.2
1,544,804	+		GFF4599	0.69	-0.2
1,544,804	+		GFF4599	0.69	+0.2
1,544,888	+		GFF4599	0.76	-0.2
1,544,888	+		GFF4599	0.76	+0.1
1,544,888	+		GFF4599	0.76	+0.4
1,544,888	+		GFF4599	0.76	-0.1
1,545,146	+				+0.0
1,545,147	-				+1.8
1,545,621	+		GFF4600	0.50	-2.4
1,545,621	+		GFF4600	0.50	-4.0
1,545,621	+		GFF4600	0.50	-3.0
1,545,621	+		GFF4600	0.50	-1.4
1,545,621	+		GFF4600	0.50	-1.2
1,545,622	-		GFF4600	0.50	-3.6
1,545,622	-		GFF4600	0.50	-3.0
1,545,745	-		GFF4600	0.65	-5.1
1,545,807	+		GFF4600	0.72	-3.0
1,545,807	+		GFF4600	0.72	-4.0
1,545,808	-		GFF4600	0.72	-4.4
1,545,960	+				-3.5
1,546,200	-		GFF4601	0.35	+0.3
1,546,649	+		GFF4602	0.14	-0.1
1,546,650	-		GFF4602	0.14	-0.0
1,546,650	-		GFF4602	0.14	+1.8
1,546,682	+		GFF4602	0.17	-1.0
1,546,682	+		GFF4602	0.17	-1.7
1,546,683	-		GFF4602	0.18	+0.5
1,546,805	+		GFF4602	0.29	+0.2
1,546,805	+		GFF4602	0.29	-0.3
1,546,805	+		GFF4602	0.29	+0.8
1,546,805	+		GFF4602	0.29	+0.3
1,546,806	-		GFF4602	0.30	+0.2
1,546,917	-		GFF4602	0.41	+0.3