Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4504

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
1,429,393	+		GFF4502	0.53	-0.6
1,429,393	+		GFF4502	0.53	-0.4
1,429,394	-		GFF4502	0.53	-0.6
1,429,881	-				+0.3
1,429,881	-				-3.0
1,429,881	-				+1.4
1,430,259	-				-1.3
1,430,394	+		GFF4504	0.23	-0.5
1,430,394	+		GFF4504	0.23	+0.1
1,430,394	+		GFF4504	0.23	+0.1
1,430,395	-		GFF4504	0.23	+0.1
1,430,395	-		GFF4504	0.23	+0.2
1,430,395	-		GFF4504	0.23	+0.8
1,430,395	-		GFF4504	0.23	+1.1
1,430,395	-		GFF4504	0.23	+0.4
1,430,712	+		GFF4504	0.89	+0.4
1,430,712	+		GFF4504	0.89	-0.3
1,430,712	+		GFF4504	0.89	-0.0
1,430,712	+		GFF4504	0.89	+0.1
1,430,712	+		GFF4504	0.89	+1.2
1,430,712	+		GFF4504	0.89	-2.0
1,430,712	-		GFF4504	0.89	+0.1
1,430,713	-		GFF4504	0.90	-0.0
1,430,713	-		GFF4504	0.90	-0.8
1,430,713	-		GFF4504	0.90	+0.3
1,430,713	-		GFF4504	0.90	-0.1
1,430,713	-		GFF4504	0.90	+1.1
1,430,713	-		GFF4504	0.90	+0.1
1,430,737	-				+0.7
1,430,827	+				+0.1
1,430,827	+				-0.2
1,430,828	-				-0.0
1,430,828	-				-0.3
1,430,828	-				+0.9
1,431,571	+				+0.6
1,431,572	-				+0.1