Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4442

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
1,371,744	-				+0.1
1,371,897	-		GFF4441	0.30	+0.4
1,371,956	+		GFF4441	0.38	-0.4
1,371,957	-		GFF4441	0.38	-0.6
1,372,070	+		GFF4441	0.54	+0.7
1,372,071	-		GFF4441	0.55	-0.2
1,372,332	-				-0.2
1,372,732	+		GFF4442	0.35	+0.2
1,372,732	+		GFF4442	0.35	-0.2
1,372,907	+		GFF4442	0.53	+1.4
1,372,933	+		GFF4442	0.56	-0.5
1,372,933	+		GFF4442	0.56	+0.1
1,372,934	-		GFF4442	0.56	+0.8
1,372,934	-		GFF4442	0.56	-1.1
1,373,158	+		GFF4442	0.79	+0.4
1,373,158	+		GFF4442	0.79	+0.5
1,373,158	+		GFF4442	0.79	-0.7
1,373,246	-		GFF4442	0.88	+0.3
1,373,263	+		GFF4442	0.89	+0.5
1,373,263	+		GFF4442	0.89	-0.1
1,373,266	+		GFF4442	0.90	+0.7
1,373,267	-		GFF4442	0.90	+0.7
1,373,583	+		GFF4443	0.17	+0.4
1,373,638	-		GFF4443	0.21	-1.2
1,373,733	+		GFF4443	0.29	-0.3
1,373,734	-		GFF4443	0.29	+0.1
1,373,734	-		GFF4443	0.29	+0.4
1,373,734	-		GFF4443	0.29	+0.3
1,373,734	-		GFF4443	0.29	+0.6
1,373,734	-		GFF4443	0.29	+0.7
1,373,734	-		GFF4443	0.29	+0.2
1,373,734	-		GFF4443	0.29	+0.1
1,374,144	+		GFF4443	0.61	+0.0
1,374,205	-		GFF4443	0.66	+0.2
1,374,205	-		GFF4443	0.66	+0.2
1,374,205	-		GFF4443	0.66	+1.4
1,374,272	+		GFF4443	0.71	-0.3
1,374,272	+		GFF4443	0.71	-1.2