Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF435

Experiment: Ying_AminoAcid20 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF433 and GFF434 are separated by 4 nucleotidesGFF434 and GFF435 are separated by 2 nucleotidesGFF435 and GFF436 overlap by 4 nucleotidesGFF436 and GFF437 overlap by 4 nucleotides GFF433 - putative exported protein, at 103,137 to 104,096 GFF433 GFF434 - 3-dehydroquinate dehydratase II (EC 4.2.1.10), at 104,101 to 104,553 GFF434 GFF435 - Enoyl-CoA hydratase (EC 4.2.1.17), at 104,556 to 105,341 GFF435 GFF436 - Enoyl-CoA hydratase (EC 4.2.1.17), at 105,338 to 106,144 GFF436 GFF437 - Acetyl-CoA acetyltransferase (EC 2.3.1.9) @ Beta-ketoadipyl CoA thiolase (EC 2.3.1.-), at 106,141 to 107,331 GFF437 Position (kb) 104 105 106Strain fitness (log2 ratio) -1 0 1at 103.588 kb on - strand, within GFF433at 103.674 kb on + strand, within GFF433at 103.675 kb on - strand, within GFF433at 103.861 kb on - strand, within GFF433at 104.141 kb on - strandat 104.389 kb on + strand, within GFF434at 104.390 kb on - strand, within GFF434at 105.130 kb on + strand, within GFF435at 105.883 kb on - strand, within GFF436

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2
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103,588 - GFF433 0.47 -0.3
103,674 + GFF433 0.56 -0.5
103,675 - GFF433 0.56 -0.6
103,861 - GFF433 0.75 -1.1
104,141 - +0.4
104,389 + GFF434 0.64 -0.6
104,390 - GFF434 0.64 -0.4
105,130 + GFF435 0.73 -0.6
105,883 - GFF436 0.68 +0.3

Or see this region's nucleotide sequence