Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF4143

Experiment: Ying_AminoAcid20 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4141 and GFF4142 overlap by 23 nucleotidesGFF4142 and GFF4143 are separated by 155 nucleotidesGFF4143 and GFF4144 are separated by 16 nucleotidesGFF4144 and GFF4145 are separated by 15 nucleotides GFF4141 - putative inner membrane protein, at 1,052,053 to 1,052,286 GFF4141 GFF4142 - transcriptional regulator, Crp/Fnr family, at 1,052,264 to 1,052,983 GFF4142 GFF4143 - Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22), at 1,053,139 to 1,054,518 GFF4143 GFF4144 - Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein, at 1,054,535 to 1,055,194 GFF4144 GFF4145 - Permease of the drug/metabolite transporter (DMT) superfamily, at 1,055,210 to 1,056,094 GFF4145 Position (kb) 1053 1054 1055Strain fitness (log2 ratio) -2 -1 0 1at 1052.198 kb on - strand, within GFF4141at 1052.325 kb on + strandat 1052.325 kb on + strandat 1052.326 kb on - strandat 1052.407 kb on - strand, within GFF4142at 1052.407 kb on - strand, within GFF4142at 1052.808 kb on + strand, within GFF4142at 1052.809 kb on - strand, within GFF4142at 1052.809 kb on - strand, within GFF4142at 1052.809 kb on - strand, within GFF4142at 1052.984 kb on + strandat 1053.012 kb on + strandat 1053.013 kb on - strandat 1053.020 kb on - strandat 1053.197 kb on - strandat 1053.250 kb on + strandat 1053.250 kb on + strandat 1053.251 kb on - strandat 1053.307 kb on + strand, within GFF4143at 1053.308 kb on - strand, within GFF4143at 1053.308 kb on - strand, within GFF4143at 1053.340 kb on + strand, within GFF4143at 1053.340 kb on + strand, within GFF4143at 1053.343 kb on + strand, within GFF4143at 1053.343 kb on + strand, within GFF4143at 1053.395 kb on - strand, within GFF4143at 1053.403 kb on + strand, within GFF4143at 1053.403 kb on + strand, within GFF4143at 1053.403 kb on + strand, within GFF4143at 1053.569 kb on - strand, within GFF4143at 1053.863 kb on - strand, within GFF4143at 1053.868 kb on + strand, within GFF4143at 1053.988 kb on + strand, within GFF4143at 1053.994 kb on + strand, within GFF4143at 1054.082 kb on - strand, within GFF4143at 1054.082 kb on - strand, within GFF4143at 1054.082 kb on - strand, within GFF4143at 1054.082 kb on - strand, within GFF4143at 1054.082 kb on - strand, within GFF4143at 1054.150 kb on + strand, within GFF4143at 1054.150 kb on + strand, within GFF4143at 1054.151 kb on - strand, within GFF4143at 1054.339 kb on + strand, within GFF4143at 1054.340 kb on - strand, within GFF4143at 1054.340 kb on - strand, within GFF4143at 1054.682 kb on + strand, within GFF4144at 1054.683 kb on - strand, within GFF4144at 1054.956 kb on - strand, within GFF4144at 1055.439 kb on + strand, within GFF4145at 1055.440 kb on - strand, within GFF4145at 1055.440 kb on - strand, within GFF4145at 1055.440 kb on - strand, within GFF4145

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2
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1,052,198 - GFF4141 0.62 +0.1
1,052,325 + -0.0
1,052,325 + +0.1
1,052,326 - -0.6
1,052,407 - GFF4142 0.20 +0.4
1,052,407 - GFF4142 0.20 +0.5
1,052,808 + GFF4142 0.76 -0.6
1,052,809 - GFF4142 0.76 +0.9
1,052,809 - GFF4142 0.76 -0.1
1,052,809 - GFF4142 0.76 -0.6
1,052,984 + +0.8
1,053,012 + +0.4
1,053,013 - +0.0
1,053,020 - +0.0
1,053,197 - +0.0
1,053,250 + +1.2
1,053,250 + +1.0
1,053,251 - +0.1
1,053,307 + GFF4143 0.12 -0.3
1,053,308 - GFF4143 0.12 -1.1
1,053,308 - GFF4143 0.12 -0.6
1,053,340 + GFF4143 0.15 +0.5
1,053,340 + GFF4143 0.15 -0.6
1,053,343 + GFF4143 0.15 +0.1
1,053,343 + GFF4143 0.15 -2.3
1,053,395 - GFF4143 0.19 +0.0
1,053,403 + GFF4143 0.19 +0.3
1,053,403 + GFF4143 0.19 -0.1
1,053,403 + GFF4143 0.19 -0.8
1,053,569 - GFF4143 0.31 -0.1
1,053,863 - GFF4143 0.52 +0.1
1,053,868 + GFF4143 0.53 -0.4
1,053,988 + GFF4143 0.62 +0.3
1,053,994 + GFF4143 0.62 +0.4
1,054,082 - GFF4143 0.68 -0.1
1,054,082 - GFF4143 0.68 -0.3
1,054,082 - GFF4143 0.68 +0.5
1,054,082 - GFF4143 0.68 -0.1
1,054,082 - GFF4143 0.68 -0.6
1,054,150 + GFF4143 0.73 +0.7
1,054,150 + GFF4143 0.73 -0.3
1,054,151 - GFF4143 0.73 +0.3
1,054,339 + GFF4143 0.87 +0.0
1,054,340 - GFF4143 0.87 +0.1
1,054,340 - GFF4143 0.87 -0.1
1,054,682 + GFF4144 0.22 +0.2
1,054,683 - GFF4144 0.22 +0.6
1,054,956 - GFF4144 0.64 +0.1
1,055,439 + GFF4145 0.26 +0.1
1,055,440 - GFF4145 0.26 +0.1
1,055,440 - GFF4145 0.26 +0.8
1,055,440 - GFF4145 0.26 -0.4

Or see this region's nucleotide sequence