Experiment: Ying_AminoAcid20 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4035 and GFF4036 are separated by 254 nucleotides GFF4036 and GFF4037 are separated by 121 nucleotides
GFF4035 - D-amino acid dehydrogenase small subunit (EC 1.4.99.1), at 952,092 to 953,339
GFF4035
GFF4036 - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62), at 953,594 to 954,883
GFF4036
GFF4037 - TRAP transporter solute receptor, TAXI family precursor, at 955,005 to 955,982
GFF4037
Position (kb) 953
954
955 Strain fitness (log2 ratio) -2
-1
0
1 at 953.197 kb on + strand, within GFF4035 at 953.198 kb on - strand, within GFF4035 at 953.203 kb on + strand, within GFF4035 at 953.203 kb on + strand, within GFF4035 at 953.203 kb on + strand, within GFF4035 at 953.203 kb on + strand, within GFF4035 at 953.203 kb on + strand, within GFF4035 at 953.203 kb on + strand, within GFF4035 at 953.203 kb on + strand, within GFF4035 at 953.204 kb on - strand, within GFF4035 at 953.204 kb on - strand, within GFF4035 at 953.204 kb on - strand, within GFF4035 at 953.382 kb on - strand at 953.382 kb on - strand at 953.382 kb on - strand at 953.382 kb on - strand at 953.453 kb on - strand at 953.511 kb on + strand at 953.511 kb on + strand at 953.511 kb on + strand at 953.511 kb on + strand at 953.512 kb on - strand at 953.747 kb on + strand, within GFF4036 at 953.747 kb on + strand, within GFF4036 at 953.747 kb on + strand, within GFF4036 at 953.895 kb on - strand, within GFF4036 at 954.095 kb on + strand, within GFF4036 at 954.222 kb on - strand, within GFF4036 at 954.467 kb on + strand, within GFF4036 at 954.746 kb on + strand, within GFF4036 at 955.128 kb on + strand, within GFF4037 at 955.128 kb on + strand, within GFF4037 at 955.129 kb on - strand, within GFF4037 at 955.129 kb on - strand, within GFF4037 at 955.129 kb on - strand, within GFF4037 at 955.129 kb on - strand, within GFF4037 at 955.129 kb on - strand, within GFF4037 at 955.129 kb on - strand, within GFF4037 at 955.129 kb on - strand, within GFF4037 at 955.129 kb on - strand, within GFF4037 at 955.131 kb on + strand, within GFF4037 at 955.131 kb on + strand, within GFF4037 at 955.332 kb on + strand, within GFF4037 at 955.590 kb on + strand, within GFF4037 at 955.590 kb on + strand, within GFF4037 at 955.590 kb on + strand, within GFF4037 at 955.590 kb on + strand, within GFF4037 at 955.591 kb on - strand, within GFF4037 at 955.591 kb on - strand, within GFF4037 at 955.591 kb on - strand, within GFF4037 at 955.594 kb on - strand, within GFF4037 at 955.707 kb on + strand, within GFF4037 at 955.708 kb on - strand, within GFF4037 at 955.768 kb on - strand, within GFF4037 at 955.821 kb on + strand, within GFF4037 at 955.822 kb on - strand, within GFF4037 at 955.822 kb on - strand, within GFF4037
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2 remove 953,197 + GFF4035 0.89 +0.4 953,198 - GFF4035 0.89 +0.1 953,203 + GFF4035 0.89 -0.2 953,203 + GFF4035 0.89 +0.1 953,203 + GFF4035 0.89 +0.8 953,203 + GFF4035 0.89 -0.4 953,203 + GFF4035 0.89 +0.5 953,203 + GFF4035 0.89 -0.0 953,203 + GFF4035 0.89 +1.4 953,204 - GFF4035 0.89 -0.2 953,204 - GFF4035 0.89 -0.6 953,204 - GFF4035 0.89 -0.3 953,382 - +0.7 953,382 - +1.0 953,382 - -0.1 953,382 - +0.4 953,453 - -0.3 953,511 + -0.1 953,511 + -1.2 953,511 + -0.0 953,511 + +0.1 953,512 - +0.2 953,747 + GFF4036 0.12 +0.7 953,747 + GFF4036 0.12 -2.2 953,747 + GFF4036 0.12 -1.1 953,895 - GFF4036 0.23 +0.3 954,095 + GFF4036 0.39 -0.2 954,222 - GFF4036 0.49 +0.4 954,467 + GFF4036 0.68 +0.1 954,746 + GFF4036 0.89 -0.1 955,128 + GFF4037 0.13 +0.4 955,128 + GFF4037 0.13 +0.3 955,129 - GFF4037 0.13 -0.2 955,129 - GFF4037 0.13 +0.2 955,129 - GFF4037 0.13 -0.0 955,129 - GFF4037 0.13 -0.5 955,129 - GFF4037 0.13 +0.4 955,129 - GFF4037 0.13 +0.2 955,129 - GFF4037 0.13 -1.8 955,129 - GFF4037 0.13 -0.7 955,131 + GFF4037 0.13 +0.1 955,131 + GFF4037 0.13 -0.3 955,332 + GFF4037 0.33 +0.1 955,590 + GFF4037 0.60 +0.0 955,590 + GFF4037 0.60 +0.1 955,590 + GFF4037 0.60 -0.0 955,590 + GFF4037 0.60 -0.0 955,591 - GFF4037 0.60 -0.4 955,591 - GFF4037 0.60 +0.1 955,591 - GFF4037 0.60 +0.3 955,594 - GFF4037 0.60 +0.8 955,707 + GFF4037 0.72 -0.3 955,708 - GFF4037 0.72 +0.5 955,768 - GFF4037 0.78 -0.2 955,821 + GFF4037 0.83 +0.0 955,822 - GFF4037 0.84 -0.7 955,822 - GFF4037 0.84 -0.5
Or see this region's nucleotide sequence