Experiment: Ying_AminoAcid20 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4030 and GFF4031 are separated by 7 nucleotides GFF4031 and GFF4032 are separated by 160 nucleotides
GFF4030 - sensory box histidine kinase, at 944,023 to 945,633
GFF4030
GFF4031 - Phytoene synthase (EC 2.5.1.32), at 945,641 to 946,492
GFF4031
GFF4032 - Probable Co/Zn/Cd efflux system membrane fusion protein, at 946,653 to 947,753
GFF4032
Position (kb) 945
946
947 Strain fitness (log2 ratio) -1
0
1 at 944.803 kb on + strand, within GFF4030 at 944.803 kb on + strand, within GFF4030 at 944.803 kb on - strand, within GFF4030 at 944.804 kb on - strand, within GFF4030 at 944.890 kb on + strand, within GFF4030 at 944.891 kb on - strand, within GFF4030 at 944.915 kb on - strand, within GFF4030 at 945.019 kb on + strand, within GFF4030 at 945.019 kb on + strand, within GFF4030 at 945.283 kb on + strand, within GFF4030 at 945.284 kb on - strand, within GFF4030 at 945.284 kb on - strand, within GFF4030 at 945.284 kb on - strand, within GFF4030 at 945.488 kb on - strand at 945.642 kb on + strand at 945.954 kb on + strand, within GFF4031 at 945.955 kb on - strand, within GFF4031 at 946.065 kb on + strand, within GFF4031 at 946.065 kb on + strand, within GFF4031 at 946.114 kb on - strand, within GFF4031 at 946.140 kb on + strand, within GFF4031 at 946.141 kb on - strand, within GFF4031 at 946.324 kb on - strand, within GFF4031 at 946.405 kb on - strand, within GFF4031 at 946.470 kb on + strand at 946.470 kb on + strand at 946.470 kb on + strand at 946.556 kb on - strand at 946.556 kb on - strand at 946.658 kb on + strand at 946.658 kb on + strand at 946.658 kb on + strand at 946.658 kb on + strand at 946.658 kb on + strand at 946.658 kb on + strand at 946.658 kb on + strand at 946.658 kb on + strand at 946.658 kb on + strand at 946.658 kb on + strand at 946.659 kb on - strand at 946.659 kb on - strand at 946.659 kb on - strand at 946.659 kb on - strand at 946.659 kb on - strand at 946.659 kb on - strand at 946.659 kb on - strand at 947.014 kb on - strand, within GFF4032 at 947.014 kb on - strand, within GFF4032 at 947.146 kb on - strand, within GFF4032 at 947.146 kb on - strand, within GFF4032 at 947.424 kb on + strand, within GFF4032 at 947.482 kb on - strand, within GFF4032
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2 remove 944,803 + GFF4030 0.48 -0.6 944,803 + GFF4030 0.48 -0.2 944,803 - GFF4030 0.48 -0.3 944,804 - GFF4030 0.48 -0.3 944,890 + GFF4030 0.54 -0.9 944,891 - GFF4030 0.54 +0.7 944,915 - GFF4030 0.55 +1.4 945,019 + GFF4030 0.62 +0.2 945,019 + GFF4030 0.62 -0.2 945,283 + GFF4030 0.78 +1.3 945,284 - GFF4030 0.78 -0.3 945,284 - GFF4030 0.78 +0.8 945,284 - GFF4030 0.78 +0.1 945,488 - +1.1 945,642 + +0.9 945,954 + GFF4031 0.37 -0.5 945,955 - GFF4031 0.37 +0.1 946,065 + GFF4031 0.50 +0.2 946,065 + GFF4031 0.50 -0.7 946,114 - GFF4031 0.56 -0.1 946,140 + GFF4031 0.59 -0.3 946,141 - GFF4031 0.59 +0.3 946,324 - GFF4031 0.80 -0.6 946,405 - GFF4031 0.90 -0.7 946,470 + +1.0 946,470 + +1.0 946,470 + -1.2 946,556 - -0.6 946,556 - -0.1 946,658 + +0.2 946,658 + -0.2 946,658 + +1.1 946,658 + -0.1 946,658 + -0.1 946,658 + +0.3 946,658 + -0.3 946,658 + -0.7 946,658 + +0.3 946,658 + +0.5 946,659 - +0.0 946,659 - -0.1 946,659 - -0.5 946,659 - -0.3 946,659 - +0.1 946,659 - +0.9 946,659 - -0.3 947,014 - GFF4032 0.33 -0.7 947,014 - GFF4032 0.33 +0.2 947,146 - GFF4032 0.45 -0.1 947,146 - GFF4032 0.45 -0.2 947,424 + GFF4032 0.70 +0.0 947,482 - GFF4032 0.75 +0.9
Or see this region's nucleotide sequence