Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3964

Experiment: Ying_AminoAcid20 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3963 and GFF3964 are separated by 79 nucleotidesGFF3964 and GFF3965 are separated by 155 nucleotides GFF3963 - Tricarboxylate transport protein TctC, at 878,126 to 879,133 GFF3963 GFF3964 - Transcriptional regulator, TetR family, at 879,213 to 879,743 GFF3964 GFF3965 - Acetolactate synthase large subunit (EC 2.2.1.6), at 879,899 to 881,602 GFF3965 Position (kb) 879 880Strain fitness (log2 ratio) -2 -1 0 1at 878.380 kb on - strand, within GFF3963at 878.586 kb on + strand, within GFF3963at 878.587 kb on - strand, within GFF3963at 878.591 kb on - strand, within GFF3963at 878.591 kb on - strand, within GFF3963at 878.602 kb on - strand, within GFF3963at 878.602 kb on - strand, within GFF3963at 878.731 kb on - strand, within GFF3963at 878.731 kb on - strand, within GFF3963at 878.781 kb on + strand, within GFF3963at 878.829 kb on + strand, within GFF3963at 878.830 kb on - strand, within GFF3963at 878.830 kb on - strand, within GFF3963at 878.830 kb on - strand, within GFF3963at 878.830 kb on - strand, within GFF3963at 878.868 kb on + strand, within GFF3963at 878.869 kb on - strand, within GFF3963at 879.175 kb on - strandat 879.229 kb on + strandat 879.230 kb on - strandat 879.235 kb on - strandat 879.334 kb on + strand, within GFF3964at 879.334 kb on + strand, within GFF3964at 879.334 kb on + strand, within GFF3964at 879.334 kb on + strand, within GFF3964at 879.340 kb on + strand, within GFF3964at 879.340 kb on + strand, within GFF3964at 879.364 kb on + strand, within GFF3964at 879.364 kb on + strand, within GFF3964at 879.364 kb on + strand, within GFF3964at 879.365 kb on - strand, within GFF3964at 879.547 kb on + strand, within GFF3964at 879.550 kb on + strand, within GFF3964at 879.550 kb on + strand, within GFF3964at 879.551 kb on - strand, within GFF3964at 879.551 kb on - strand, within GFF3964at 879.551 kb on - strand, within GFF3964at 879.551 kb on - strand, within GFF3964at 879.644 kb on - strand, within GFF3964at 879.644 kb on - strand, within GFF3964at 879.644 kb on - strand, within GFF3964at 879.691 kb on + strandat 879.691 kb on + strandat 879.691 kb on + strandat 879.691 kb on - strandat 879.692 kb on - strandat 879.697 kb on + strandat 879.697 kb on + strandat 879.697 kb on + strandat 879.697 kb on + strandat 879.697 kb on + strandat 879.697 kb on + strandat 879.697 kb on + strandat 879.697 kb on + strandat 879.697 kb on + strandat 879.697 kb on + strandat 879.801 kb on - strandat 879.801 kb on - strandat 879.801 kb on - strandat 879.863 kb on + strandat 879.983 kb on + strandat 879.984 kb on - strandat 879.984 kb on - strandat 880.250 kb on + strand, within GFF3965at 880.250 kb on + strand, within GFF3965at 880.331 kb on + strand, within GFF3965at 880.331 kb on + strand, within GFF3965at 880.332 kb on - strand, within GFF3965at 880.652 kb on + strand, within GFF3965at 880.653 kb on - strand, within GFF3965at 880.653 kb on - strand, within GFF3965

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2
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878,380 - GFF3963 0.25 -0.7
878,586 + GFF3963 0.46 +0.8
878,587 - GFF3963 0.46 +0.2
878,591 - GFF3963 0.46 -0.7
878,591 - GFF3963 0.46 -0.0
878,602 - GFF3963 0.47 +0.3
878,602 - GFF3963 0.47 -0.9
878,731 - GFF3963 0.60 -0.1
878,731 - GFF3963 0.60 +0.4
878,781 + GFF3963 0.65 -0.4
878,829 + GFF3963 0.70 +0.1
878,830 - GFF3963 0.70 -1.1
878,830 - GFF3963 0.70 -1.9
878,830 - GFF3963 0.70 -0.0
878,830 - GFF3963 0.70 +0.2
878,868 + GFF3963 0.74 -0.5
878,869 - GFF3963 0.74 -1.0
879,175 - +0.5
879,229 + -0.6
879,230 - +0.6
879,235 - -0.1
879,334 + GFF3964 0.23 +0.1
879,334 + GFF3964 0.23 +0.6
879,334 + GFF3964 0.23 +0.2
879,334 + GFF3964 0.23 -0.6
879,340 + GFF3964 0.24 -0.4
879,340 + GFF3964 0.24 -1.1
879,364 + GFF3964 0.28 -0.4
879,364 + GFF3964 0.28 -2.3
879,364 + GFF3964 0.28 -0.4
879,365 - GFF3964 0.29 -0.7
879,547 + GFF3964 0.63 +0.4
879,550 + GFF3964 0.63 -0.7
879,550 + GFF3964 0.63 -0.4
879,551 - GFF3964 0.64 -0.6
879,551 - GFF3964 0.64 +0.3
879,551 - GFF3964 0.64 +0.2
879,551 - GFF3964 0.64 -1.6
879,644 - GFF3964 0.81 -0.4
879,644 - GFF3964 0.81 +0.6
879,644 - GFF3964 0.81 +0.9
879,691 + +1.0
879,691 + -0.6
879,691 + -0.6
879,691 - -0.6
879,692 - -0.6
879,697 + -0.0
879,697 + -0.3
879,697 + +1.4
879,697 + -0.2
879,697 + +0.8
879,697 + +0.6
879,697 + -0.5
879,697 + -0.6
879,697 + -0.6
879,697 + -0.1
879,801 - -0.4
879,801 - -0.3
879,801 - -0.5
879,863 + +0.4
879,983 + -0.7
879,984 - -0.1
879,984 - +0.1
880,250 + GFF3965 0.21 -0.3
880,250 + GFF3965 0.21 +0.4
880,331 + GFF3965 0.25 -0.3
880,331 + GFF3965 0.25 -1.3
880,332 - GFF3965 0.25 +1.4
880,652 + GFF3965 0.44 +0.6
880,653 - GFF3965 0.44 +0.1
880,653 - GFF3965 0.44 +0.1

Or see this region's nucleotide sequence