Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3827

Experiment: Ying_AminoAcid20 rep B; time point 2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3826 and GFF3827 are separated by 53 nucleotidesGFF3827 and GFF3828 are separated by 241 nucleotides GFF3826 - UDP-galactose-lipid carrier transferase (EC 2.-.-.-), at 734,435 to 735,343 GFF3826 GFF3827 - Ferric iron ABC transporter, iron-binding protein, at 735,397 to 736,452 GFF3827 GFF3828 - UPF0028 protein YchK, at 736,694 to 737,497 GFF3828 Position (kb) 735 736 737Strain fitness (log2 ratio) -2 -1 0 1at 734.401 kb on + strandat 734.401 kb on - strandat 734.402 kb on - strandat 734.492 kb on + strandat 734.588 kb on + strand, within GFF3826at 734.588 kb on + strand, within GFF3826at 734.588 kb on + strand, within GFF3826at 734.589 kb on - strand, within GFF3826at 734.589 kb on - strand, within GFF3826at 734.589 kb on - strand, within GFF3826at 734.589 kb on - strand, within GFF3826at 734.798 kb on + strand, within GFF3826at 734.799 kb on - strand, within GFF3826at 734.799 kb on - strand, within GFF3826at 734.847 kb on + strand, within GFF3826at 734.848 kb on - strand, within GFF3826at 734.864 kb on + strand, within GFF3826at 734.865 kb on - strand, within GFF3826at 734.865 kb on - strand, within GFF3826at 734.915 kb on + strand, within GFF3826at 734.915 kb on + strand, within GFF3826at 734.916 kb on - strand, within GFF3826at 734.948 kb on + strand, within GFF3826at 734.987 kb on + strand, within GFF3826at 734.987 kb on + strand, within GFF3826at 734.987 kb on + strand, within GFF3826at 735.107 kb on + strand, within GFF3826at 735.107 kb on + strand, within GFF3826at 735.107 kb on + strand, within GFF3826at 735.107 kb on + strand, within GFF3826at 735.107 kb on + strand, within GFF3826at 735.108 kb on - strand, within GFF3826at 735.108 kb on - strand, within GFF3826at 735.323 kb on + strandat 735.323 kb on + strandat 735.323 kb on + strandat 735.323 kb on + strandat 735.323 kb on + strandat 735.323 kb on + strandat 735.324 kb on - strandat 735.324 kb on - strandat 735.324 kb on - strandat 735.324 kb on - strandat 735.324 kb on - strandat 735.367 kb on + strandat 735.367 kb on + strandat 735.367 kb on + strandat 735.368 kb on - strandat 735.368 kb on - strandat 735.398 kb on + strandat 735.398 kb on + strandat 735.398 kb on + strandat 735.398 kb on + strandat 735.398 kb on + strandat 735.398 kb on + strandat 735.398 kb on + strandat 735.398 kb on + strandat 735.399 kb on - strandat 735.399 kb on - strandat 735.399 kb on - strandat 735.569 kb on + strand, within GFF3827at 735.569 kb on + strand, within GFF3827at 735.569 kb on + strand, within GFF3827at 735.569 kb on + strand, within GFF3827at 735.570 kb on - strand, within GFF3827at 735.570 kb on - strand, within GFF3827at 735.570 kb on - strand, within GFF3827at 735.570 kb on - strand, within GFF3827at 735.570 kb on - strand, within GFF3827at 735.581 kb on + strand, within GFF3827at 735.582 kb on - strand, within GFF3827at 735.599 kb on + strand, within GFF3827at 735.764 kb on + strand, within GFF3827at 735.764 kb on + strand, within GFF3827at 735.765 kb on - strand, within GFF3827at 735.765 kb on - strand, within GFF3827at 735.765 kb on - strand, within GFF3827at 735.765 kb on - strand, within GFF3827at 735.765 kb on - strand, within GFF3827at 735.765 kb on - strand, within GFF3827at 735.765 kb on - strand, within GFF3827at 735.767 kb on + strand, within GFF3827at 735.767 kb on + strand, within GFF3827at 735.767 kb on + strand, within GFF3827at 735.767 kb on + strand, within GFF3827at 735.767 kb on + strand, within GFF3827at 735.767 kb on + strand, within GFF3827at 735.768 kb on - strand, within GFF3827at 735.768 kb on - strand, within GFF3827at 735.768 kb on - strand, within GFF3827at 735.768 kb on - strand, within GFF3827at 735.768 kb on - strand, within GFF3827at 735.935 kb on + strand, within GFF3827at 735.935 kb on + strand, within GFF3827at 735.935 kb on + strand, within GFF3827at 735.935 kb on + strand, within GFF3827at 735.935 kb on + strand, within GFF3827at 735.935 kb on + strand, within GFF3827at 735.936 kb on - strand, within GFF3827at 735.936 kb on - strand, within GFF3827at 735.998 kb on + strand, within GFF3827at 735.999 kb on - strand, within GFF3827at 735.999 kb on - strand, within GFF3827at 736.037 kb on + strand, within GFF3827at 736.037 kb on + strand, within GFF3827at 736.037 kb on + strand, within GFF3827at 736.038 kb on - strand, within GFF3827at 736.316 kb on + strand, within GFF3827at 736.316 kb on + strand, within GFF3827at 736.316 kb on + strand, within GFF3827at 736.316 kb on + strand, within GFF3827at 736.316 kb on + strand, within GFF3827at 736.316 kb on + strand, within GFF3827at 736.316 kb on + strand, within GFF3827at 736.316 kb on + strand, within GFF3827at 736.316 kb on + strand, within GFF3827at 736.316 kb on + strand, within GFF3827at 736.316 kb on + strand, within GFF3827at 736.316 kb on + strand, within GFF3827at 736.316 kb on + strand, within GFF3827at 736.316 kb on + strand, within GFF3827at 736.317 kb on - strand, within GFF3827at 736.317 kb on - strand, within GFF3827at 736.317 kb on - strand, within GFF3827at 736.317 kb on - strand, within GFF3827at 736.317 kb on - strand, within GFF3827at 736.317 kb on - strand, within GFF3827at 736.352 kb on + strandat 736.352 kb on + strandat 736.352 kb on + strandat 736.353 kb on - strandat 736.483 kb on - strandat 736.483 kb on - strandat 736.483 kb on - strandat 736.483 kb on - strandat 736.483 kb on - strandat 736.531 kb on - strandat 736.531 kb on - strandat 736.531 kb on - strandat 736.582 kb on - strandat 736.847 kb on + strand, within GFF3828at 736.848 kb on - strand, within GFF3828at 736.848 kb on - strand, within GFF3828at 736.973 kb on + strand, within GFF3828at 736.973 kb on + strand, within GFF3828at 736.974 kb on - strand, within GFF3828at 736.974 kb on - strand, within GFF3828at 737.156 kb on + strand, within GFF3828at 737.156 kb on + strand, within GFF3828at 737.157 kb on - strand, within GFF3828at 737.157 kb on - strand, within GFF3828at 737.196 kb on - strand, within GFF3828

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2
remove
734,401 + +0.9
734,401 - +0.3
734,402 - +0.3
734,492 + +0.4
734,588 + GFF3826 0.17 -0.3
734,588 + GFF3826 0.17 +0.3
734,588 + GFF3826 0.17 -0.4
734,589 - GFF3826 0.17 -0.2
734,589 - GFF3826 0.17 +0.2
734,589 - GFF3826 0.17 +0.2
734,589 - GFF3826 0.17 -0.5
734,798 + GFF3826 0.40 -0.2
734,799 - GFF3826 0.40 +0.8
734,799 - GFF3826 0.40 +0.4
734,847 + GFF3826 0.45 +0.0
734,848 - GFF3826 0.45 -0.2
734,864 + GFF3826 0.47 +0.1
734,865 - GFF3826 0.47 -0.2
734,865 - GFF3826 0.47 +0.0
734,915 + GFF3826 0.53 -0.2
734,915 + GFF3826 0.53 +0.2
734,916 - GFF3826 0.53 +0.0
734,948 + GFF3826 0.56 +0.7
734,987 + GFF3826 0.61 +0.4
734,987 + GFF3826 0.61 +0.4
734,987 + GFF3826 0.61 +0.3
735,107 + GFF3826 0.74 +0.3
735,107 + GFF3826 0.74 +0.0
735,107 + GFF3826 0.74 +0.3
735,107 + GFF3826 0.74 -0.9
735,107 + GFF3826 0.74 +0.2
735,108 - GFF3826 0.74 +1.0
735,108 - GFF3826 0.74 +0.3
735,323 + +0.5
735,323 + +0.7
735,323 + +0.6
735,323 + +0.0
735,323 + +0.3
735,323 + +1.2
735,324 - +0.8
735,324 - +0.3
735,324 - +0.2
735,324 - +0.2
735,324 - +0.4
735,367 + +0.1
735,367 + -0.6
735,367 + -0.1
735,368 - +0.3
735,368 - -0.2
735,398 + -0.8
735,398 + +0.1
735,398 + +0.1
735,398 + +0.2
735,398 + -0.1
735,398 + +0.3
735,398 + +0.8
735,398 + +0.2
735,399 - +0.1
735,399 - -0.4
735,399 - -0.0
735,569 + GFF3827 0.16 +0.5
735,569 + GFF3827 0.16 -0.2
735,569 + GFF3827 0.16 -1.0
735,569 + GFF3827 0.16 -0.8
735,570 - GFF3827 0.16 -0.2
735,570 - GFF3827 0.16 +0.3
735,570 - GFF3827 0.16 -0.8
735,570 - GFF3827 0.16 -0.3
735,570 - GFF3827 0.16 -0.6
735,581 + GFF3827 0.17 +0.2
735,582 - GFF3827 0.18 -0.3
735,599 + GFF3827 0.19 +1.4
735,764 + GFF3827 0.35 +0.3
735,764 + GFF3827 0.35 -0.6
735,765 - GFF3827 0.35 -0.0
735,765 - GFF3827 0.35 -1.6
735,765 - GFF3827 0.35 +0.1
735,765 - GFF3827 0.35 +0.6
735,765 - GFF3827 0.35 +0.4
735,765 - GFF3827 0.35 -0.5
735,765 - GFF3827 0.35 -0.2
735,767 + GFF3827 0.35 -0.4
735,767 + GFF3827 0.35 +0.2
735,767 + GFF3827 0.35 -0.2
735,767 + GFF3827 0.35 -0.9
735,767 + GFF3827 0.35 -0.5
735,767 + GFF3827 0.35 -0.8
735,768 - GFF3827 0.35 -0.3
735,768 - GFF3827 0.35 -0.3
735,768 - GFF3827 0.35 +0.1
735,768 - GFF3827 0.35 +0.3
735,768 - GFF3827 0.35 +0.2
735,935 + GFF3827 0.51 -0.3
735,935 + GFF3827 0.51 -0.0
735,935 + GFF3827 0.51 +1.6
735,935 + GFF3827 0.51 -2.2
735,935 + GFF3827 0.51 -0.1
735,935 + GFF3827 0.51 +0.2
735,936 - GFF3827 0.51 +0.4
735,936 - GFF3827 0.51 -0.5
735,998 + GFF3827 0.57 +0.8
735,999 - GFF3827 0.57 +0.2
735,999 - GFF3827 0.57 -0.4
736,037 + GFF3827 0.61 +0.2
736,037 + GFF3827 0.61 +1.4
736,037 + GFF3827 0.61 -0.4
736,038 - GFF3827 0.61 -0.2
736,316 + GFF3827 0.87 +0.6
736,316 + GFF3827 0.87 +0.5
736,316 + GFF3827 0.87 -1.7
736,316 + GFF3827 0.87 +0.4
736,316 + GFF3827 0.87 -0.3
736,316 + GFF3827 0.87 -0.7
736,316 + GFF3827 0.87 -0.2
736,316 + GFF3827 0.87 -0.9
736,316 + GFF3827 0.87 -0.9
736,316 + GFF3827 0.87 +0.4
736,316 + GFF3827 0.87 -0.5
736,316 + GFF3827 0.87 +0.3
736,316 + GFF3827 0.87 -0.5
736,316 + GFF3827 0.87 -0.1
736,317 - GFF3827 0.87 -0.2
736,317 - GFF3827 0.87 -0.8
736,317 - GFF3827 0.87 +0.0
736,317 - GFF3827 0.87 -0.4
736,317 - GFF3827 0.87 -1.1
736,317 - GFF3827 0.87 -0.5
736,352 + -0.2
736,352 + -0.5
736,352 + +0.3
736,353 - -0.8
736,483 - +0.4
736,483 - -1.2
736,483 - +1.1
736,483 - +0.3
736,483 - -0.3
736,531 - -0.4
736,531 - +1.2
736,531 - +0.1
736,582 - -0.3
736,847 + GFF3828 0.19 +0.3
736,848 - GFF3828 0.19 +0.8
736,848 - GFF3828 0.19 -0.2
736,973 + GFF3828 0.35 -0.1
736,973 + GFF3828 0.35 +1.4
736,974 - GFF3828 0.35 +0.4
736,974 - GFF3828 0.35 -0.2
737,156 + GFF3828 0.57 -0.7
737,156 + GFF3828 0.57 +0.7
737,157 - GFF3828 0.58 -0.1
737,157 - GFF3828 0.58 -0.0
737,196 - GFF3828 0.62 -0.5

Or see this region's nucleotide sequence