Experiment: Ying_AminoAcid20 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3705 and GFF3706 are separated by 18 nucleotides GFF3706 and GFF3707 are separated by 43 nucleotides GFF3707 and GFF3708 are separated by 10 nucleotides GFF3708 and GFF3709 overlap by 4 nucleotides
GFF3705 - Glyoxalase family protein, at 598,356 to 599,330
GFF3705
GFF3706 - hypothetical protein, at 599,349 to 599,573
GFF3706
GFF3707 - Vanillate O-demethylase oxygenase subunit (EC 1.14.13.82), at 599,617 to 600,645
GFF3707
GFF3708 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Vanillate O-demethylase oxidoreductase (EC 1.14.13.-), at 600,656 to 601,624
GFF3708
GFF3709 - Transcriptional regulator, MarR family, at 601,621 to 602,163
GFF3709
Position (kb) 599
600
601 Strain fitness (log2 ratio) -1
0
1 at 598.786 kb on - strand, within GFF3705 at 598.860 kb on + strand, within GFF3705 at 598.860 kb on + strand, within GFF3705 at 598.861 kb on - strand, within GFF3705 at 598.861 kb on - strand, within GFF3705 at 598.861 kb on - strand, within GFF3705 at 598.861 kb on - strand, within GFF3705 at 598.861 kb on - strand, within GFF3705 at 598.897 kb on - strand, within GFF3705 at 599.148 kb on + strand, within GFF3705 at 599.149 kb on - strand, within GFF3705 at 599.149 kb on - strand, within GFF3705 at 599.151 kb on + strand, within GFF3705 at 599.151 kb on + strand, within GFF3705 at 599.151 kb on + strand, within GFF3705 at 599.151 kb on + strand, within GFF3705 at 599.152 kb on - strand, within GFF3705 at 599.367 kb on + strand at 599.368 kb on - strand at 599.409 kb on + strand, within GFF3706 at 599.410 kb on - strand, within GFF3706 at 599.410 kb on - strand, within GFF3706 at 599.484 kb on + strand, within GFF3706 at 599.485 kb on - strand, within GFF3706 at 599.622 kb on + strand at 599.623 kb on - strand at 599.623 kb on - strand at 600.001 kb on + strand, within GFF3707 at 600.091 kb on + strand, within GFF3707 at 600.091 kb on + strand, within GFF3707 at 600.092 kb on - strand, within GFF3707 at 600.118 kb on + strand, within GFF3707 at 600.119 kb on - strand, within GFF3707 at 600.157 kb on + strand, within GFF3707 at 600.158 kb on - strand, within GFF3707 at 600.376 kb on + strand, within GFF3707 at 600.376 kb on + strand, within GFF3707 at 600.377 kb on - strand, within GFF3707 at 600.565 kb on + strand at 600.565 kb on + strand at 600.565 kb on + strand at 600.565 kb on + strand at 600.565 kb on + strand at 600.565 kb on + strand at 600.566 kb on - strand at 600.566 kb on - strand at 600.822 kb on - strand, within GFF3708 at 600.858 kb on - strand, within GFF3708 at 600.858 kb on - strand, within GFF3708 at 601.082 kb on + strand, within GFF3708 at 601.083 kb on - strand, within GFF3708 at 601.232 kb on + strand, within GFF3708 at 601.232 kb on + strand, within GFF3708 at 601.232 kb on + strand, within GFF3708 at 601.233 kb on - strand, within GFF3708 at 601.233 kb on - strand, within GFF3708 at 601.235 kb on + strand, within GFF3708 at 601.235 kb on + strand, within GFF3708 at 601.235 kb on + strand, within GFF3708 at 601.235 kb on + strand, within GFF3708 at 601.235 kb on + strand, within GFF3708 at 601.236 kb on - strand, within GFF3708 at 601.236 kb on - strand, within GFF3708 at 601.236 kb on - strand, within GFF3708 at 601.236 kb on - strand, within GFF3708 at 601.622 kb on + strand at 601.622 kb on + strand at 601.622 kb on + strand at 601.622 kb on + strand at 601.622 kb on + strand at 601.623 kb on - strand at 601.623 kb on - strand at 601.623 kb on - strand at 601.623 kb on - strand at 601.623 kb on - strand at 601.623 kb on - strand at 601.623 kb on - strand at 601.623 kb on - strand at 601.623 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2 remove 598,786 - GFF3705 0.44 +0.6 598,860 + GFF3705 0.52 +0.2 598,860 + GFF3705 0.52 -0.2 598,861 - GFF3705 0.52 +0.8 598,861 - GFF3705 0.52 -0.4 598,861 - GFF3705 0.52 -0.5 598,861 - GFF3705 0.52 +0.1 598,861 - GFF3705 0.52 +0.2 598,897 - GFF3705 0.55 -0.2 599,148 + GFF3705 0.81 +0.1 599,149 - GFF3705 0.81 -0.3 599,149 - GFF3705 0.81 +1.1 599,151 + GFF3705 0.82 -0.6 599,151 + GFF3705 0.82 +0.3 599,151 + GFF3705 0.82 -0.2 599,151 + GFF3705 0.82 +0.5 599,152 - GFF3705 0.82 +0.8 599,367 + +1.2 599,368 - +0.8 599,409 + GFF3706 0.27 -1.4 599,410 - GFF3706 0.27 +0.0 599,410 - GFF3706 0.27 -1.6 599,484 + GFF3706 0.60 +0.8 599,485 - GFF3706 0.60 +0.6 599,622 + +0.2 599,623 - -0.1 599,623 - +0.4 600,001 + GFF3707 0.37 -0.3 600,091 + GFF3707 0.46 -0.3 600,091 + GFF3707 0.46 -0.9 600,092 - GFF3707 0.46 +0.4 600,118 + GFF3707 0.49 -0.6 600,119 - GFF3707 0.49 +0.3 600,157 + GFF3707 0.52 +0.1 600,158 - GFF3707 0.53 -0.0 600,376 + GFF3707 0.74 -0.3 600,376 + GFF3707 0.74 +0.5 600,377 - GFF3707 0.74 -0.4 600,565 + -0.6 600,565 + +0.4 600,565 + -0.4 600,565 + +0.5 600,565 + -0.8 600,565 + -0.1 600,566 - -0.9 600,566 - -0.3 600,822 - GFF3708 0.17 +0.3 600,858 - GFF3708 0.21 +0.1 600,858 - GFF3708 0.21 +0.3 601,082 + GFF3708 0.44 -0.0 601,083 - GFF3708 0.44 +0.0 601,232 + GFF3708 0.59 +1.1 601,232 + GFF3708 0.59 +0.7 601,232 + GFF3708 0.59 +0.4 601,233 - GFF3708 0.60 +0.0 601,233 - GFF3708 0.60 +0.3 601,235 + GFF3708 0.60 +0.2 601,235 + GFF3708 0.60 -0.1 601,235 + GFF3708 0.60 +0.2 601,235 + GFF3708 0.60 -0.7 601,235 + GFF3708 0.60 +0.1 601,236 - GFF3708 0.60 -0.2 601,236 - GFF3708 0.60 +0.5 601,236 - GFF3708 0.60 +0.4 601,236 - GFF3708 0.60 +0.8 601,622 + -0.4 601,622 + -0.5 601,622 + +0.4 601,622 + -0.5 601,622 + -0.1 601,623 - +0.6 601,623 - +0.2 601,623 - +0.4 601,623 - -0.4 601,623 - -0.1 601,623 - +0.3 601,623 - +0.1 601,623 - -0.5 601,623 - -0.6
Or see this region's nucleotide sequence