Experiment: Ying_AminoAcid20 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3684 and GFF3685 overlap by 4 nucleotides GFF3685 and GFF3686 overlap by 4 nucleotides GFF3686 and GFF3687 are separated by 14 nucleotides
GFF3684 - NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3), at 573,095 to 574,348
GFF3684
GFF3685 - NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3), at 574,345 to 574,857
GFF3685
GFF3686 - NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3), at 574,854 to 576,227
GFF3686
GFF3687 - NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3), at 576,242 to 578,374
GFF3687
Position (kb) 574
575
576
577 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 573.873 kb on - strand, within GFF3684 at 573.881 kb on + strand, within GFF3684 at 574.562 kb on - strand, within GFF3685 at 574.571 kb on - strand, within GFF3685 at 574.571 kb on - strand, within GFF3685 at 574.571 kb on - strand, within GFF3685 at 574.977 kb on + strand at 575.247 kb on + strand, within GFF3686 at 575.247 kb on + strand, within GFF3686 at 575.248 kb on - strand, within GFF3686 at 575.319 kb on + strand, within GFF3686 at 575.347 kb on - strand, within GFF3686 at 575.677 kb on - strand, within GFF3686 at 575.677 kb on - strand, within GFF3686 at 575.712 kb on + strand, within GFF3686 at 576.225 kb on + strand at 576.225 kb on + strand at 576.327 kb on - strand at 576.867 kb on - strand, within GFF3687 at 577.127 kb on + strand, within GFF3687 at 577.128 kb on - strand, within GFF3687
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2 remove 573,873 - GFF3684 0.62 -2.0 573,881 + GFF3684 0.63 -2.9 574,562 - GFF3685 0.42 -1.6 574,571 - GFF3685 0.44 -1.6 574,571 - GFF3685 0.44 -0.9 574,571 - GFF3685 0.44 -1.8 574,977 + -2.8 575,247 + GFF3686 0.29 -0.9 575,247 + GFF3686 0.29 -2.2 575,248 - GFF3686 0.29 -4.0 575,319 + GFF3686 0.34 -3.0 575,347 - GFF3686 0.36 -1.4 575,677 - GFF3686 0.60 -1.8 575,677 - GFF3686 0.60 -2.2 575,712 + GFF3686 0.62 -3.1 576,225 + +0.1 576,225 + -1.0 576,327 - -2.7 576,867 - GFF3687 0.29 -3.7 577,127 + GFF3687 0.41 -2.0 577,128 - GFF3687 0.42 -3.6
Or see this region's nucleotide sequence