Experiment: Ying_AminoAcid20 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3644 and GFF3645 overlap by 4 nucleotides GFF3645 and GFF3646 are separated by 343 nucleotides GFF3646 and GFF3647 are separated by 7 nucleotides
GFF3644 - Ribonuclease BN (EC 3.1.-.-), at 528,146 to 529,000
GFF3644
GFF3645 - CBS domain protein, at 528,997 to 529,428
GFF3645
GFF3646 - RNA polymerase sigma-54 factor RpoN, at 529,772 to 531,196
GFF3646
GFF3647 - Chemotaxis protein methyltransferase CheR (EC 2.1.1.80), at 531,204 to 533,075
GFF3647
Position (kb) 529
530
531
532 Strain fitness (log2 ratio) -1
0
1 at 528.918 kb on + strand at 528.918 kb on + strand at 528.919 kb on - strand at 528.919 kb on - strand at 528.921 kb on + strand at 528.922 kb on - strand at 530.100 kb on + strand, within GFF3646 at 530.654 kb on + strand, within GFF3646 at 530.654 kb on + strand, within GFF3646 at 530.655 kb on - strand, within GFF3646 at 530.909 kb on + strand, within GFF3646 at 530.909 kb on + strand, within GFF3646 at 530.909 kb on + strand, within GFF3646 at 530.909 kb on + strand, within GFF3646 at 530.909 kb on + strand, within GFF3646 at 530.909 kb on + strand, within GFF3646 at 530.909 kb on + strand, within GFF3646 at 530.909 kb on + strand, within GFF3646 at 530.909 kb on + strand, within GFF3646 at 530.910 kb on - strand, within GFF3646 at 530.910 kb on - strand, within GFF3646 at 530.910 kb on - strand, within GFF3646 at 530.910 kb on - strand, within GFF3646 at 530.934 kb on - strand, within GFF3646 at 530.934 kb on - strand, within GFF3646 at 531.125 kb on + strand at 531.989 kb on - strand, within GFF3647
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2 remove 528,918 + +1.0 528,918 + +0.0 528,919 - -0.9 528,919 - -0.2 528,921 + -0.3 528,922 - +0.1 530,100 + GFF3646 0.23 +0.5 530,654 + GFF3646 0.62 -0.6 530,654 + GFF3646 0.62 -0.5 530,655 - GFF3646 0.62 +0.1 530,909 + GFF3646 0.80 -1.6 530,909 + GFF3646 0.80 +0.7 530,909 + GFF3646 0.80 +0.1 530,909 + GFF3646 0.80 -0.2 530,909 + GFF3646 0.80 +0.5 530,909 + GFF3646 0.80 +0.1 530,909 + GFF3646 0.80 -0.4 530,909 + GFF3646 0.80 +0.7 530,909 + GFF3646 0.80 +0.2 530,910 - GFF3646 0.80 +0.2 530,910 - GFF3646 0.80 -0.4 530,910 - GFF3646 0.80 +1.2 530,910 - GFF3646 0.80 -0.1 530,934 - GFF3646 0.82 -0.4 530,934 - GFF3646 0.82 +1.1 531,125 + -0.1 531,989 - GFF3647 0.42 -0.1
Or see this region's nucleotide sequence