Experiment: Ying_AminoAcid20 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3579 and GFF3580 are separated by 44 nucleotides GFF3580 and GFF3581 are separated by 21 nucleotides GFF3581 and GFF3582 are separated by 117 nucleotides
GFF3579 - DNA helicase II related protein, at 465,171 to 467,012
GFF3579
GFF3580 - putative membrane protein, at 467,057 to 467,464
GFF3580
GFF3581 - Glutaminyl-tRNA synthetase (EC 6.1.1.18), at 467,486 to 469,321
GFF3581
GFF3582 - FIG00758123: hypothetical protein, at 469,439 to 470,713
GFF3582
Position (kb) 467
468
469
470 Strain fitness (log2 ratio) -2
-1
0
1 at 466.710 kb on + strand, within GFF3579 at 466.880 kb on + strand at 466.880 kb on + strand at 466.881 kb on - strand at 466.881 kb on - strand at 466.926 kb on + strand at 466.926 kb on + strand at 466.926 kb on + strand at 466.926 kb on + strand at 466.926 kb on + strand at 466.927 kb on - strand at 466.927 kb on - strand at 466.952 kb on + strand at 466.952 kb on + strand at 466.952 kb on + strand at 466.952 kb on + strand at 466.952 kb on + strand at 466.952 kb on + strand at 466.952 kb on + strand at 466.953 kb on - strand at 466.953 kb on - strand at 466.953 kb on - strand at 466.953 kb on - strand at 467.008 kb on - strand at 467.101 kb on - strand, within GFF3580 at 469.331 kb on + strand at 469.331 kb on + strand at 469.332 kb on - strand at 469.332 kb on - strand at 469.332 kb on - strand at 469.371 kb on + strand at 469.372 kb on - strand at 469.372 kb on - strand at 469.372 kb on - strand at 469.372 kb on - strand at 469.372 kb on - strand at 469.796 kb on + strand, within GFF3582 at 469.796 kb on + strand, within GFF3582 at 469.796 kb on + strand, within GFF3582 at 469.796 kb on + strand, within GFF3582 at 469.796 kb on + strand, within GFF3582 at 469.799 kb on + strand, within GFF3582 at 469.799 kb on + strand, within GFF3582 at 469.800 kb on - strand, within GFF3582 at 469.800 kb on - strand, within GFF3582 at 470.066 kb on + strand, within GFF3582 at 470.075 kb on + strand, within GFF3582 at 470.076 kb on - strand, within GFF3582 at 470.076 kb on - strand, within GFF3582 at 470.145 kb on - strand, within GFF3582
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2 remove 466,710 + GFF3579 0.84 -0.1 466,880 + +0.0 466,880 + +0.4 466,881 - +0.2 466,881 - +0.6 466,926 + -0.4 466,926 + +1.1 466,926 + +1.0 466,926 + -0.3 466,926 + +0.8 466,927 - -0.3 466,927 - +0.4 466,952 + -0.2 466,952 + +0.8 466,952 + -0.1 466,952 + +1.0 466,952 + -0.1 466,952 + -0.2 466,952 + -0.2 466,953 - +0.2 466,953 - -0.7 466,953 - +0.0 466,953 - +0.0 467,008 - -0.2 467,101 - GFF3580 0.11 -0.1 469,331 + +1.4 469,331 + -0.2 469,332 - -0.4 469,332 - +0.4 469,332 - +0.8 469,371 + -0.2 469,372 - -0.1 469,372 - -0.6 469,372 - -0.1 469,372 - +0.6 469,372 - +0.8 469,796 + GFF3582 0.28 +0.8 469,796 + GFF3582 0.28 -2.2 469,796 + GFF3582 0.28 -0.2 469,796 + GFF3582 0.28 +0.3 469,796 + GFF3582 0.28 +0.1 469,799 + GFF3582 0.28 -0.2 469,799 + GFF3582 0.28 +0.0 469,800 - GFF3582 0.28 +0.4 469,800 - GFF3582 0.28 -0.8 470,066 + GFF3582 0.49 -0.1 470,075 + GFF3582 0.50 +0.4 470,076 - GFF3582 0.50 +0.5 470,076 - GFF3582 0.50 +0.4 470,145 - GFF3582 0.55 +0.4
Or see this region's nucleotide sequence