Experiment: Ying_AminoAcid20 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3579 and GFF3580 are separated by 44 nucleotides GFF3580 and GFF3581 are separated by 21 nucleotides
GFF3579 - DNA helicase II related protein, at 465,171 to 467,012
GFF3579
GFF3580 - putative membrane protein, at 467,057 to 467,464
GFF3580
GFF3581 - Glutaminyl-tRNA synthetase (EC 6.1.1.18), at 467,486 to 469,321
GFF3581
Position (kb) 467
468 Strain fitness (log2 ratio) -1
0
1 at 466.149 kb on + strand, within GFF3579 at 466.150 kb on - strand, within GFF3579 at 466.257 kb on + strand, within GFF3579 at 466.257 kb on + strand, within GFF3579 at 466.257 kb on + strand, within GFF3579 at 466.258 kb on - strand, within GFF3579 at 466.359 kb on + strand, within GFF3579 at 466.359 kb on + strand, within GFF3579 at 466.359 kb on + strand, within GFF3579 at 466.360 kb on - strand, within GFF3579 at 466.360 kb on - strand, within GFF3579 at 466.380 kb on + strand, within GFF3579 at 466.380 kb on + strand, within GFF3579 at 466.380 kb on + strand, within GFF3579 at 466.380 kb on + strand, within GFF3579 at 466.380 kb on + strand, within GFF3579 at 466.380 kb on + strand, within GFF3579 at 466.380 kb on + strand, within GFF3579 at 466.380 kb on + strand, within GFF3579 at 466.381 kb on - strand, within GFF3579 at 466.381 kb on - strand, within GFF3579 at 466.381 kb on - strand, within GFF3579 at 466.710 kb on + strand, within GFF3579 at 466.880 kb on + strand at 466.880 kb on + strand at 466.881 kb on - strand at 466.881 kb on - strand at 466.926 kb on + strand at 466.926 kb on + strand at 466.926 kb on + strand at 466.926 kb on + strand at 466.926 kb on + strand at 466.927 kb on - strand at 466.927 kb on - strand at 466.952 kb on + strand at 466.952 kb on + strand at 466.952 kb on + strand at 466.952 kb on + strand at 466.952 kb on + strand at 466.952 kb on + strand at 466.952 kb on + strand at 466.953 kb on - strand at 466.953 kb on - strand at 466.953 kb on - strand at 466.953 kb on - strand at 467.008 kb on - strand at 467.101 kb on - strand, within GFF3580
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2 remove 466,149 + GFF3579 0.53 +0.0 466,150 - GFF3579 0.53 -0.5 466,257 + GFF3579 0.59 -0.3 466,257 + GFF3579 0.59 +0.2 466,257 + GFF3579 0.59 -0.3 466,258 - GFF3579 0.59 -0.2 466,359 + GFF3579 0.64 -0.3 466,359 + GFF3579 0.64 -0.3 466,359 + GFF3579 0.64 -1.1 466,360 - GFF3579 0.65 -1.0 466,360 - GFF3579 0.65 +1.1 466,380 + GFF3579 0.66 +0.4 466,380 + GFF3579 0.66 -0.4 466,380 + GFF3579 0.66 -0.3 466,380 + GFF3579 0.66 -1.0 466,380 + GFF3579 0.66 +1.1 466,380 + GFF3579 0.66 +0.1 466,380 + GFF3579 0.66 +0.0 466,380 + GFF3579 0.66 -0.7 466,381 - GFF3579 0.66 -0.1 466,381 - GFF3579 0.66 +0.3 466,381 - GFF3579 0.66 -1.0 466,710 + GFF3579 0.84 -0.1 466,880 + +0.0 466,880 + +0.4 466,881 - +0.2 466,881 - +0.6 466,926 + -0.4 466,926 + +1.1 466,926 + +1.0 466,926 + -0.3 466,926 + +0.8 466,927 - -0.3 466,927 - +0.4 466,952 + -0.2 466,952 + +0.8 466,952 + -0.1 466,952 + +1.0 466,952 + -0.1 466,952 + -0.2 466,952 + -0.2 466,953 - +0.2 466,953 - -0.7 466,953 - +0.0 466,953 - +0.0 467,008 - -0.2 467,101 - GFF3580 0.11 -0.1
Or see this region's nucleotide sequence