Experiment: Ying_AminoAcid20 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3442 and GFF3443 are separated by 601 nucleotides GFF3443 and GFF3444 are separated by 379 nucleotides GFF3444 and GFF3445 overlap by 4 nucleotides
GFF3442 - Cytochrome c oxidase polypeptide II (EC 1.9.3.1), at 322,807 to 323,319
GFF3442
GFF3443 - Shufflon-specific DNA recombinase, at 323,921 to 324,847
GFF3443
GFF3444 - FIG00956188: hypothetical protein, at 325,227 to 325,502
GFF3444
GFF3445 - Conjugative transfer protein TrbI, at 325,499 to 326,818
GFF3445
Position (kb) 323
324
325 Strain fitness (log2 ratio) -1
0
1
2 at 323.029 kb on + strand, within GFF3442 at 323.030 kb on - strand, within GFF3442 at 323.481 kb on + strand at 323.482 kb on - strand at 323.483 kb on + strand at 323.496 kb on + strand at 323.497 kb on - strand at 323.507 kb on + strand at 323.508 kb on - strand at 323.655 kb on + strand at 323.655 kb on + strand at 323.656 kb on - strand at 323.656 kb on - strand at 323.693 kb on + strand at 323.693 kb on + strand at 323.693 kb on + strand at 323.694 kb on - strand at 323.694 kb on - strand at 323.694 kb on - strand at 323.694 kb on - strand at 323.694 kb on - strand at 323.933 kb on + strand at 323.933 kb on + strand at 323.933 kb on + strand at 323.933 kb on + strand at 323.934 kb on - strand at 323.934 kb on - strand at 323.951 kb on + strand at 323.952 kb on - strand at 324.099 kb on - strand, within GFF3443 at 324.279 kb on + strand, within GFF3443 at 324.290 kb on + strand, within GFF3443 at 324.291 kb on - strand, within GFF3443 at 324.332 kb on + strand, within GFF3443 at 324.332 kb on + strand, within GFF3443 at 324.332 kb on + strand, within GFF3443 at 324.332 kb on + strand, within GFF3443 at 324.332 kb on + strand, within GFF3443 at 324.333 kb on - strand, within GFF3443 at 324.333 kb on - strand, within GFF3443 at 324.333 kb on - strand, within GFF3443 at 324.464 kb on + strand, within GFF3443 at 324.464 kb on + strand, within GFF3443 at 324.464 kb on + strand, within GFF3443 at 324.465 kb on - strand, within GFF3443 at 324.560 kb on - strand, within GFF3443 at 324.602 kb on + strand, within GFF3443 at 324.602 kb on + strand, within GFF3443 at 324.602 kb on + strand, within GFF3443 at 324.602 kb on + strand, within GFF3443 at 324.664 kb on - strand, within GFF3443 at 324.715 kb on + strand, within GFF3443 at 324.715 kb on + strand, within GFF3443 at 324.716 kb on - strand, within GFF3443 at 324.716 kb on - strand, within GFF3443 at 324.934 kb on + strand at 324.934 kb on + strand at 324.934 kb on + strand at 324.934 kb on + strand at 324.934 kb on + strand at 324.934 kb on + strand at 324.958 kb on + strand at 324.958 kb on + strand at 324.958 kb on + strand at 324.959 kb on - strand at 324.959 kb on - strand at 324.975 kb on + strand at 325.017 kb on + strand at 325.018 kb on - strand at 325.172 kb on - strand at 325.186 kb on + strand at 325.186 kb on + strand at 325.375 kb on + strand, within GFF3444 at 325.536 kb on + strand at 325.576 kb on + strand at 325.577 kb on - strand at 325.577 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2 remove 323,029 + GFF3442 0.43 -0.3 323,030 - GFF3442 0.43 -0.3 323,481 + -0.0 323,482 - +0.7 323,483 + -0.5 323,496 + +0.1 323,497 - -0.6 323,507 + +0.0 323,508 - -0.1 323,655 + +0.2 323,655 + +1.0 323,656 - +1.0 323,656 - -0.5 323,693 + +0.4 323,693 + +0.4 323,693 + -0.1 323,694 - +0.4 323,694 - -0.0 323,694 - +0.8 323,694 - +0.6 323,694 - -1.0 323,933 + -0.3 323,933 + -0.6 323,933 + +1.8 323,933 + -0.4 323,934 - +0.4 323,934 - +0.1 323,951 + -0.3 323,952 - +0.4 324,099 - GFF3443 0.19 +0.2 324,279 + GFF3443 0.39 +0.2 324,290 + GFF3443 0.40 -0.1 324,291 - GFF3443 0.40 +0.1 324,332 + GFF3443 0.44 -0.2 324,332 + GFF3443 0.44 +0.2 324,332 + GFF3443 0.44 +0.2 324,332 + GFF3443 0.44 -0.1 324,332 + GFF3443 0.44 -0.2 324,333 - GFF3443 0.44 -0.4 324,333 - GFF3443 0.44 +1.4 324,333 - GFF3443 0.44 -0.9 324,464 + GFF3443 0.59 -0.8 324,464 + GFF3443 0.59 +0.2 324,464 + GFF3443 0.59 +0.1 324,465 - GFF3443 0.59 -0.3 324,560 - GFF3443 0.69 +0.4 324,602 + GFF3443 0.73 -0.8 324,602 + GFF3443 0.73 -0.7 324,602 + GFF3443 0.73 -0.2 324,602 + GFF3443 0.73 -0.1 324,664 - GFF3443 0.80 +0.4 324,715 + GFF3443 0.86 -0.3 324,715 + GFF3443 0.86 +0.2 324,716 - GFF3443 0.86 +0.3 324,716 - GFF3443 0.86 -0.2 324,934 + -0.0 324,934 + +0.2 324,934 + +0.4 324,934 + +0.7 324,934 + +0.2 324,934 + -0.2 324,958 + -0.1 324,958 + -0.1 324,958 + -0.5 324,959 - +0.4 324,959 - -0.6 324,975 + -0.0 325,017 + +0.0 325,018 - +0.3 325,172 - -0.2 325,186 + +0.3 325,186 + -0.0 325,375 + GFF3444 0.54 +0.2 325,536 + +0.1 325,576 + +0.0 325,577 - +0.2 325,577 - +0.1
Or see this region's nucleotide sequence