Experiment: Ying_AminoAcid20 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3318 and GFF3319 overlap by 1 nucleotides GFF3319 and GFF3320 overlap by 23 nucleotides GFF3320 and GFF3321 are separated by 7 nucleotides
GFF3318 - S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284), at 204,771 to 205,877
GFF3318
GFF3319 - S-formylglutathione hydrolase (EC 3.1.2.12), at 205,877 to 206,719
GFF3319
GFF3320 - Similar to phosphoglycolate phosphatase, clustered with ribosomal large subunit pseudouridine synthase C, at 206,697 to 207,383
GFF3320
GFF3321 - Iron-sulfur cluster-binding protein, Rieske family, at 207,391 to 207,771
GFF3321
Position (kb) 205
206
207 Strain fitness (log2 ratio) -1
0
1
2 at 204.900 kb on + strand, within GFF3318 at 204.901 kb on - strand, within GFF3318 at 204.903 kb on + strand, within GFF3318 at 204.904 kb on - strand, within GFF3318 at 204.904 kb on - strand, within GFF3318 at 204.904 kb on - strand, within GFF3318 at 205.032 kb on + strand, within GFF3318 at 205.032 kb on + strand, within GFF3318 at 205.173 kb on + strand, within GFF3318 at 205.173 kb on + strand, within GFF3318 at 205.173 kb on + strand, within GFF3318 at 205.173 kb on + strand, within GFF3318 at 205.174 kb on - strand, within GFF3318 at 205.174 kb on - strand, within GFF3318 at 205.200 kb on + strand, within GFF3318 at 205.201 kb on - strand, within GFF3318 at 205.266 kb on + strand, within GFF3318 at 205.267 kb on - strand, within GFF3318 at 205.267 kb on - strand, within GFF3318 at 205.542 kb on + strand, within GFF3318 at 205.542 kb on + strand, within GFF3318 at 205.542 kb on + strand, within GFF3318 at 205.543 kb on - strand, within GFF3318 at 205.543 kb on - strand, within GFF3318 at 205.755 kb on + strand, within GFF3318 at 205.756 kb on - strand, within GFF3318 at 205.756 kb on - strand, within GFF3318 at 205.756 kb on - strand, within GFF3318 at 205.931 kb on + strand at 205.932 kb on - strand at 205.932 kb on - strand at 206.025 kb on - strand, within GFF3319 at 206.193 kb on - strand, within GFF3319 at 206.373 kb on - strand, within GFF3319 at 206.448 kb on - strand, within GFF3319 at 206.643 kb on - strand at 206.643 kb on - strand at 206.654 kb on + strand at 206.657 kb on + strand at 206.657 kb on + strand at 206.657 kb on + strand at 206.657 kb on + strand at 206.658 kb on - strand at 206.862 kb on + strand, within GFF3320 at 206.862 kb on + strand, within GFF3320 at 206.862 kb on + strand, within GFF3320 at 206.863 kb on - strand, within GFF3320 at 206.863 kb on - strand, within GFF3320 at 206.959 kb on + strand, within GFF3320 at 206.961 kb on + strand, within GFF3320 at 206.961 kb on + strand, within GFF3320 at 206.961 kb on + strand, within GFF3320 at 206.961 kb on + strand, within GFF3320 at 206.962 kb on - strand, within GFF3320 at 206.962 kb on - strand, within GFF3320 at 206.962 kb on - strand, within GFF3320 at 206.962 kb on - strand, within GFF3320 at 206.962 kb on - strand, within GFF3320 at 207.286 kb on - strand, within GFF3320 at 207.419 kb on - strand at 207.481 kb on + strand, within GFF3321 at 207.481 kb on + strand, within GFF3321 at 207.482 kb on - strand, within GFF3321 at 207.517 kb on + strand, within GFF3321 at 207.517 kb on + strand, within GFF3321 at 207.518 kb on - strand, within GFF3321 at 207.538 kb on + strand, within GFF3321 at 207.539 kb on - strand, within GFF3321 at 207.539 kb on - strand, within GFF3321 at 207.643 kb on + strand, within GFF3321 at 207.643 kb on + strand, within GFF3321 at 207.643 kb on + strand, within GFF3321 at 207.644 kb on - strand, within GFF3321 at 207.644 kb on - strand, within GFF3321
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2 remove 204,900 + GFF3318 0.12 -0.7 204,901 - GFF3318 0.12 +0.3 204,903 + GFF3318 0.12 -0.4 204,904 - GFF3318 0.12 -1.4 204,904 - GFF3318 0.12 -0.1 204,904 - GFF3318 0.12 +0.6 205,032 + GFF3318 0.24 +1.5 205,032 + GFF3318 0.24 +0.1 205,173 + GFF3318 0.36 +0.0 205,173 + GFF3318 0.36 -0.1 205,173 + GFF3318 0.36 -0.1 205,173 + GFF3318 0.36 +0.2 205,174 - GFF3318 0.36 -1.1 205,174 - GFF3318 0.36 +0.7 205,200 + GFF3318 0.39 -0.4 205,201 - GFF3318 0.39 -0.5 205,266 + GFF3318 0.45 +0.1 205,267 - GFF3318 0.45 +0.1 205,267 - GFF3318 0.45 -0.5 205,542 + GFF3318 0.70 +0.2 205,542 + GFF3318 0.70 -1.1 205,542 + GFF3318 0.70 +1.5 205,543 - GFF3318 0.70 +0.2 205,543 - GFF3318 0.70 -0.2 205,755 + GFF3318 0.89 -0.2 205,756 - GFF3318 0.89 +0.1 205,756 - GFF3318 0.89 +0.4 205,756 - GFF3318 0.89 +1.1 205,931 + -1.1 205,932 - -0.5 205,932 - +0.4 206,025 - GFF3319 0.18 -0.7 206,193 - GFF3319 0.37 -0.6 206,373 - GFF3319 0.59 +0.1 206,448 - GFF3319 0.68 -0.2 206,643 - +0.6 206,643 - +0.1 206,654 + +0.8 206,657 + -0.1 206,657 + +0.0 206,657 + -0.2 206,657 + -0.0 206,658 - +1.1 206,862 + GFF3320 0.24 -0.4 206,862 + GFF3320 0.24 -0.8 206,862 + GFF3320 0.24 +0.2 206,863 - GFF3320 0.24 -0.2 206,863 - GFF3320 0.24 -0.2 206,959 + GFF3320 0.38 +0.4 206,961 + GFF3320 0.38 +0.9 206,961 + GFF3320 0.38 -1.0 206,961 + GFF3320 0.38 +1.8 206,961 + GFF3320 0.38 -0.1 206,962 - GFF3320 0.39 -0.1 206,962 - GFF3320 0.39 -0.1 206,962 - GFF3320 0.39 -0.5 206,962 - GFF3320 0.39 -0.5 206,962 - GFF3320 0.39 -0.1 207,286 - GFF3320 0.86 -0.8 207,419 - +0.5 207,481 + GFF3321 0.24 +0.6 207,481 + GFF3321 0.24 -1.5 207,482 - GFF3321 0.24 +1.2 207,517 + GFF3321 0.33 +0.1 207,517 + GFF3321 0.33 +0.2 207,518 - GFF3321 0.33 +0.1 207,538 + GFF3321 0.39 -0.7 207,539 - GFF3321 0.39 +0.4 207,539 - GFF3321 0.39 -0.5 207,643 + GFF3321 0.66 -0.7 207,643 + GFF3321 0.66 +0.6 207,643 + GFF3321 0.66 +0.4 207,644 - GFF3321 0.66 +1.5 207,644 - GFF3321 0.66 -0.6
Or see this region's nucleotide sequence