Experiment: Ying_AminoAcid20 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3270 and GFF3271 are separated by 53 nucleotides GFF3271 and GFF3272 are separated by 91 nucleotides GFF3272 and GFF3273 are separated by 133 nucleotides
GFF3270 - Two-component response regulator, at 153,504 to 154,517
GFF3270
GFF3271 - Sensor histidine kinase, at 154,571 to 155,896
GFF3271
GFF3272 - DNA-binding response regulator, LuxR family, at 155,988 to 156,623
GFF3272
GFF3273 - Carbon starvation protein A, at 156,757 to 158,829
GFF3273
Position (kb) 154
155
156 Strain fitness (log2 ratio) -1
0
1 at 153.633 kb on + strand, within GFF3270 at 154.338 kb on + strand, within GFF3270 at 154.339 kb on - strand, within GFF3270 at 154.683 kb on - strand at 154.703 kb on + strand at 154.703 kb on + strand at 154.736 kb on + strand, within GFF3271 at 154.736 kb on + strand, within GFF3271 at 154.773 kb on - strand, within GFF3271 at 154.838 kb on + strand, within GFF3271 at 154.853 kb on + strand, within GFF3271 at 154.865 kb on + strand, within GFF3271 at 155.009 kb on + strand, within GFF3271 at 155.009 kb on + strand, within GFF3271 at 155.058 kb on - strand, within GFF3271 at 155.069 kb on + strand, within GFF3271 at 156.255 kb on + strand, within GFF3272 at 156.256 kb on - strand, within GFF3272 at 156.256 kb on - strand, within GFF3272 at 156.307 kb on - strand, within GFF3272 at 156.591 kb on + strand at 156.628 kb on + strand at 156.628 kb on + strand at 156.639 kb on - strand at 156.639 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2 remove 153,633 + GFF3270 0.13 -0.1 154,338 + GFF3270 0.82 -0.7 154,339 - GFF3270 0.82 -0.3 154,683 - -0.1 154,703 + -0.7 154,703 + +0.8 154,736 + GFF3271 0.12 -0.0 154,736 + GFF3271 0.12 +0.1 154,773 - GFF3271 0.15 -0.2 154,838 + GFF3271 0.20 +1.2 154,853 + GFF3271 0.21 +0.5 154,865 + GFF3271 0.22 -0.2 155,009 + GFF3271 0.33 +0.6 155,009 + GFF3271 0.33 +0.5 155,058 - GFF3271 0.37 +0.2 155,069 + GFF3271 0.38 +1.1 156,255 + GFF3272 0.42 +0.6 156,256 - GFF3272 0.42 -1.2 156,256 - GFF3272 0.42 -0.2 156,307 - GFF3272 0.50 -0.1 156,591 + -0.3 156,628 + -0.5 156,628 + -0.4 156,639 - -0.1 156,639 - -0.7
Or see this region's nucleotide sequence