Experiment: Ying_AminoAcid20 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF288 and GFF289 are separated by 52 nucleotides GFF289 and GFF290 overlap by 4 nucleotides GFF290 and GFF291 are separated by 0 nucleotides GFF291 and GFF292 are separated by 34 nucleotides
GFF288 - Transcriptional regulator, at 304,143 to 304,634
GFF288
GFF289 - Acyl-phosphate:glycerol-3-phosphate O-acyltransferase PlsY, at 304,687 to 305,310
GFF289
GFF290 - RidA/YER057c/UK114 superfamily, group 2, YoaB-like protein, at 305,307 to 305,672
GFF290
GFF291 - Transporter, at 305,673 to 306,284
GFF291
GFF292 - FIG001943: hypothetical protein YajQ, at 306,319 to 306,810
GFF292
Position (kb) 305
306 Strain fitness (log2 ratio) -1
0
1 at 304.446 kb on + strand, within GFF288 at 304.447 kb on - strand, within GFF288 at 304.632 kb on + strand at 304.633 kb on - strand at 304.633 kb on - strand at 305.350 kb on - strand, within GFF290 at 305.382 kb on + strand, within GFF290 at 305.382 kb on + strand, within GFF290 at 305.383 kb on - strand, within GFF290 at 305.514 kb on + strand, within GFF290 at 305.514 kb on + strand, within GFF290 at 305.514 kb on + strand, within GFF290 at 305.515 kb on - strand, within GFF290 at 305.515 kb on - strand, within GFF290 at 305.515 kb on - strand, within GFF290 at 305.677 kb on + strand at 305.677 kb on + strand at 305.677 kb on + strand at 305.678 kb on - strand at 305.755 kb on + strand, within GFF291 at 305.756 kb on - strand, within GFF291 at 305.756 kb on - strand, within GFF291 at 305.893 kb on + strand, within GFF291 at 305.893 kb on + strand, within GFF291 at 305.893 kb on + strand, within GFF291 at 305.893 kb on + strand, within GFF291
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2 remove 304,446 + GFF288 0.62 +0.4 304,447 - GFF288 0.62 +0.2 304,632 + +0.2 304,633 - -0.2 304,633 - -1.0 305,350 - GFF290 0.12 -0.1 305,382 + GFF290 0.20 +0.3 305,382 + GFF290 0.20 +0.0 305,383 - GFF290 0.21 +0.8 305,514 + GFF290 0.57 +0.2 305,514 + GFF290 0.57 +0.5 305,514 + GFF290 0.57 +1.1 305,515 - GFF290 0.57 +0.1 305,515 - GFF290 0.57 -0.6 305,515 - GFF290 0.57 +0.2 305,677 + -0.4 305,677 + -0.0 305,677 + -0.2 305,678 - -0.7 305,755 + GFF291 0.13 -1.0 305,756 - GFF291 0.14 -0.5 305,756 - GFF291 0.14 -0.2 305,893 + GFF291 0.36 +0.1 305,893 + GFF291 0.36 +0.0 305,893 + GFF291 0.36 -1.0 305,893 + GFF291 0.36 +0.4
Or see this region's nucleotide sequence