Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF272

Experiment: Ying_AminoAcid20 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF271 and GFF272 are separated by 17 nucleotidesGFF272 and GFF273 overlap by 4 nucleotides GFF271 - amidohydrolase 2, at 284,131 to 285,051 GFF271 GFF272 - 4,5-dihydroxyphthalate decarboxylase (EC 4.1.1.55), at 285,069 to 285,995 GFF272 GFF273 - Tricarboxylate transport protein TctC, at 285,992 to 286,954 GFF273 Position (kb) 285 286Strain fitness (log2 ratio) -2 -1 0 1at 284.081 kb on + strandat 284.081 kb on + strandat 284.093 kb on - strandat 284.098 kb on + strandat 284.297 kb on - strand, within GFF271at 284.297 kb on - strand, within GFF271at 284.297 kb on - strand, within GFF271at 284.368 kb on + strand, within GFF271at 284.386 kb on + strand, within GFF271at 284.387 kb on - strand, within GFF271at 284.387 kb on - strand, within GFF271at 284.387 kb on - strand, within GFF271at 284.387 kb on - strand, within GFF271at 284.587 kb on + strand, within GFF271at 284.588 kb on - strand, within GFF271at 284.732 kb on - strand, within GFF271at 284.732 kb on - strand, within GFF271at 284.788 kb on + strand, within GFF271at 284.788 kb on + strand, within GFF271at 284.788 kb on + strand, within GFF271at 284.789 kb on - strand, within GFF271at 284.789 kb on - strand, within GFF271at 284.789 kb on - strand, within GFF271at 284.789 kb on - strand, within GFF271at 284.789 kb on - strand, within GFF271at 285.102 kb on + strandat 285.102 kb on + strandat 285.103 kb on - strandat 285.336 kb on + strand, within GFF272at 285.336 kb on + strand, within GFF272at 285.336 kb on + strand, within GFF272at 285.573 kb on + strand, within GFF272at 285.574 kb on - strand, within GFF272at 286.136 kb on + strand, within GFF273at 286.136 kb on + strand, within GFF273at 286.136 kb on + strand, within GFF273at 286.308 kb on - strand, within GFF273at 286.308 kb on - strand, within GFF273at 286.308 kb on - strand, within GFF273at 286.358 kb on + strand, within GFF273at 286.358 kb on + strand, within GFF273at 286.359 kb on - strand, within GFF273at 286.359 kb on - strand, within GFF273at 286.359 kb on - strand, within GFF273at 286.359 kb on - strand, within GFF273at 286.359 kb on - strand, within GFF273at 286.359 kb on - strand, within GFF273at 286.359 kb on - strand, within GFF273at 286.445 kb on + strand, within GFF273at 286.446 kb on - strand, within GFF273at 286.446 kb on - strand, within GFF273at 286.446 kb on - strand, within GFF273at 286.446 kb on - strand, within GFF273at 286.490 kb on + strand, within GFF273at 286.490 kb on + strand, within GFF273at 286.491 kb on - strand, within GFF273at 286.491 kb on - strand, within GFF273at 286.491 kb on - strand, within GFF273at 286.491 kb on - strand, within GFF273at 286.491 kb on - strand, within GFF273at 286.616 kb on + strand, within GFF273at 286.616 kb on + strand, within GFF273at 286.616 kb on + strand, within GFF273at 286.617 kb on - strand, within GFF273at 286.617 kb on - strand, within GFF273at 286.718 kb on + strand, within GFF273at 286.718 kb on + strand, within GFF273at 286.718 kb on + strand, within GFF273at 286.718 kb on + strand, within GFF273at 286.719 kb on - strand, within GFF273at 286.719 kb on - strand, within GFF273at 286.983 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2
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284,081 + +1.6
284,081 + +0.6
284,093 - +0.6
284,098 + -0.3
284,297 - GFF271 0.18 -0.3
284,297 - GFF271 0.18 -0.0
284,297 - GFF271 0.18 +1.3
284,368 + GFF271 0.26 -0.6
284,386 + GFF271 0.28 +0.6
284,387 - GFF271 0.28 +0.0
284,387 - GFF271 0.28 -0.1
284,387 - GFF271 0.28 -1.0
284,387 - GFF271 0.28 +0.6
284,587 + GFF271 0.50 +0.1
284,588 - GFF271 0.50 +0.2
284,732 - GFF271 0.65 -1.2
284,732 - GFF271 0.65 -0.3
284,788 + GFF271 0.71 +0.3
284,788 + GFF271 0.71 -0.4
284,788 + GFF271 0.71 -0.1
284,789 - GFF271 0.71 -0.1
284,789 - GFF271 0.71 -0.4
284,789 - GFF271 0.71 -0.1
284,789 - GFF271 0.71 -0.0
284,789 - GFF271 0.71 +0.6
285,102 + -0.8
285,102 + -0.3
285,103 - -0.1
285,336 + GFF272 0.29 +0.1
285,336 + GFF272 0.29 -0.0
285,336 + GFF272 0.29 +0.4
285,573 + GFF272 0.54 +0.8
285,574 - GFF272 0.54 +0.2
286,136 + GFF273 0.15 -0.5
286,136 + GFF273 0.15 -1.0
286,136 + GFF273 0.15 -0.0
286,308 - GFF273 0.33 -0.1
286,308 - GFF273 0.33 -0.1
286,308 - GFF273 0.33 +0.6
286,358 + GFF273 0.38 +1.4
286,358 + GFF273 0.38 -0.7
286,359 - GFF273 0.38 +0.4
286,359 - GFF273 0.38 -0.4
286,359 - GFF273 0.38 -0.1
286,359 - GFF273 0.38 -0.0
286,359 - GFF273 0.38 -1.8
286,359 - GFF273 0.38 +0.2
286,359 - GFF273 0.38 -0.2
286,445 + GFF273 0.47 -0.6
286,446 - GFF273 0.47 -0.5
286,446 - GFF273 0.47 +0.3
286,446 - GFF273 0.47 +0.1
286,446 - GFF273 0.47 -0.1
286,490 + GFF273 0.52 +0.6
286,490 + GFF273 0.52 -0.8
286,491 - GFF273 0.52 -0.4
286,491 - GFF273 0.52 +0.1
286,491 - GFF273 0.52 -0.8
286,491 - GFF273 0.52 -0.1
286,491 - GFF273 0.52 -0.6
286,616 + GFF273 0.65 -0.3
286,616 + GFF273 0.65 -1.0
286,616 + GFF273 0.65 -0.4
286,617 - GFF273 0.65 -0.2
286,617 - GFF273 0.65 -0.6
286,718 + GFF273 0.75 -0.4
286,718 + GFF273 0.75 +0.3
286,718 + GFF273 0.75 +1.2
286,718 + GFF273 0.75 -0.6
286,719 - GFF273 0.75 +0.8
286,719 - GFF273 0.75 -0.4
286,983 + -0.2

Or see this region's nucleotide sequence