Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2631

Experiment: Ying_AminoAcid20 rep B; time point 2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2630 and GFF2631 are separated by 155 nucleotidesGFF2631 and GFF2632 are separated by 1 nucleotides GFF2630 - Type I restriction-modification system, DNA-methyltransferase subunit M (EC 2.1.1.72), at 223,492 to 225,051 GFF2630 GFF2631 - Type I restriction-modification system, specificity subunit S (EC 3.1.21.3), at 225,207 to 226,274 GFF2631 GFF2632 - Anticodon nuclease, at 226,276 to 227,391 GFF2632 Position (kb) 225 226 227Strain fitness (log2 ratio) -2 -1 0 1at 224.266 kb on + strand, within GFF2630at 224.266 kb on + strand, within GFF2630at 224.286 kb on + strand, within GFF2630at 224.286 kb on + strand, within GFF2630at 224.286 kb on + strand, within GFF2630at 224.286 kb on + strand, within GFF2630at 224.286 kb on + strand, within GFF2630at 224.286 kb on + strand, within GFF2630at 224.286 kb on + strand, within GFF2630at 224.287 kb on - strand, within GFF2630at 224.287 kb on - strand, within GFF2630at 224.287 kb on - strand, within GFF2630at 224.287 kb on - strand, within GFF2630at 224.308 kb on + strand, within GFF2630at 224.308 kb on + strand, within GFF2630at 224.308 kb on + strand, within GFF2630at 224.308 kb on + strand, within GFF2630at 224.309 kb on - strand, within GFF2630at 224.401 kb on + strand, within GFF2630at 224.401 kb on + strand, within GFF2630at 224.402 kb on - strand, within GFF2630at 224.402 kb on - strand, within GFF2630at 224.481 kb on + strand, within GFF2630at 224.481 kb on + strand, within GFF2630at 224.481 kb on + strand, within GFF2630at 224.524 kb on + strand, within GFF2630at 224.524 kb on + strand, within GFF2630at 224.524 kb on + strand, within GFF2630at 224.524 kb on + strand, within GFF2630at 224.524 kb on + strand, within GFF2630at 224.525 kb on - strand, within GFF2630at 224.525 kb on - strand, within GFF2630at 224.525 kb on - strand, within GFF2630at 224.525 kb on - strand, within GFF2630at 224.575 kb on + strand, within GFF2630at 224.575 kb on + strand, within GFF2630at 224.576 kb on - strand, within GFF2630at 224.608 kb on + strand, within GFF2630at 224.608 kb on + strand, within GFF2630at 224.609 kb on - strand, within GFF2630at 224.619 kb on + strand, within GFF2630at 224.626 kb on + strand, within GFF2630at 224.626 kb on + strand, within GFF2630at 224.626 kb on + strand, within GFF2630at 224.626 kb on + strand, within GFF2630at 224.626 kb on + strand, within GFF2630at 224.626 kb on + strand, within GFF2630at 224.626 kb on + strand, within GFF2630at 224.626 kb on + strand, within GFF2630at 224.627 kb on - strand, within GFF2630at 224.627 kb on - strand, within GFF2630at 224.627 kb on - strand, within GFF2630at 224.627 kb on - strand, within GFF2630at 224.627 kb on - strand, within GFF2630at 224.627 kb on - strand, within GFF2630at 224.627 kb on - strand, within GFF2630at 224.735 kb on + strand, within GFF2630at 224.736 kb on + strand, within GFF2630at 224.736 kb on - strand, within GFF2630at 224.736 kb on - strand, within GFF2630at 224.736 kb on - strand, within GFF2630at 224.884 kb on + strand, within GFF2630at 224.884 kb on + strand, within GFF2630at 224.884 kb on + strand, within GFF2630at 224.884 kb on + strand, within GFF2630at 224.884 kb on - strand, within GFF2630at 224.885 kb on - strand, within GFF2630at 224.885 kb on - strand, within GFF2630at 224.905 kb on + strandat 224.905 kb on + strandat 224.905 kb on + strandat 224.906 kb on - strandat 224.906 kb on - strandat 224.906 kb on - strandat 224.906 kb on - strandat 224.906 kb on - strandat 224.906 kb on - strandat 224.906 kb on - strandat 224.906 kb on - strandat 224.906 kb on - strandat 224.906 kb on - strandat 224.906 kb on - strandat 224.906 kb on - strandat 225.125 kb on + strandat 225.126 kb on - strandat 225.126 kb on - strandat 225.126 kb on - strandat 225.126 kb on - strandat 225.178 kb on - strandat 225.187 kb on - strandat 225.261 kb on + strandat 225.262 kb on - strandat 225.262 kb on - strandat 225.262 kb on - strandat 225.348 kb on - strand, within GFF2631at 225.358 kb on - strand, within GFF2631at 225.515 kb on - strand, within GFF2631at 225.569 kb on + strand, within GFF2631at 225.569 kb on + strand, within GFF2631at 225.590 kb on + strand, within GFF2631at 225.591 kb on - strand, within GFF2631at 225.600 kb on + strand, within GFF2631at 225.601 kb on - strand, within GFF2631at 225.601 kb on - strand, within GFF2631at 225.606 kb on + strand, within GFF2631at 225.606 kb on + strand, within GFF2631at 225.607 kb on - strand, within GFF2631at 225.607 kb on - strand, within GFF2631at 225.609 kb on + strand, within GFF2631at 225.610 kb on - strand, within GFF2631at 225.622 kb on + strand, within GFF2631at 225.622 kb on + strand, within GFF2631at 225.622 kb on + strand, within GFF2631at 225.623 kb on - strand, within GFF2631at 225.680 kb on - strand, within GFF2631at 225.698 kb on + strand, within GFF2631at 225.699 kb on - strand, within GFF2631at 225.699 kb on - strand, within GFF2631at 225.741 kb on + strand, within GFF2631at 225.753 kb on + strand, within GFF2631at 225.753 kb on + strand, within GFF2631at 225.753 kb on + strand, within GFF2631at 225.753 kb on + strand, within GFF2631at 225.753 kb on + strand, within GFF2631at 225.754 kb on - strand, within GFF2631at 225.754 kb on - strand, within GFF2631at 225.806 kb on + strand, within GFF2631at 225.807 kb on - strand, within GFF2631at 225.807 kb on - strand, within GFF2631at 225.807 kb on - strand, within GFF2631at 225.810 kb on + strand, within GFF2631at 225.812 kb on + strand, within GFF2631at 225.812 kb on + strand, within GFF2631at 225.812 kb on + strand, within GFF2631at 225.812 kb on + strand, within GFF2631at 225.812 kb on + strand, within GFF2631at 225.812 kb on + strand, within GFF2631at 225.812 kb on + strand, within GFF2631at 225.812 kb on + strand, within GFF2631at 225.813 kb on - strand, within GFF2631at 225.813 kb on - strand, within GFF2631at 225.813 kb on - strand, within GFF2631at 225.813 kb on - strand, within GFF2631at 225.813 kb on - strand, within GFF2631at 225.813 kb on - strand, within GFF2631at 225.813 kb on - strand, within GFF2631at 225.813 kb on - strand, within GFF2631at 225.813 kb on - strand, within GFF2631at 225.825 kb on + strand, within GFF2631at 225.826 kb on - strand, within GFF2631at 225.936 kb on + strand, within GFF2631at 225.936 kb on + strand, within GFF2631at 225.937 kb on - strand, within GFF2631at 225.937 kb on - strand, within GFF2631at 225.937 kb on - strand, within GFF2631at 225.937 kb on - strand, within GFF2631at 225.975 kb on + strand, within GFF2631at 225.975 kb on + strand, within GFF2631at 225.975 kb on + strand, within GFF2631at 225.975 kb on + strand, within GFF2631at 225.976 kb on - strand, within GFF2631at 225.976 kb on - strand, within GFF2631at 225.976 kb on - strand, within GFF2631at 225.996 kb on + strand, within GFF2631at 225.996 kb on + strand, within GFF2631at 225.996 kb on + strand, within GFF2631at 225.996 kb on + strand, within GFF2631at 225.997 kb on - strand, within GFF2631at 225.997 kb on - strand, within GFF2631at 226.215 kb on + strandat 226.215 kb on + strandat 226.216 kb on - strandat 226.216 kb on - strandat 226.216 kb on - strandat 226.216 kb on - strandat 226.221 kb on + strandat 226.221 kb on + strandat 226.222 kb on - strandat 226.222 kb on - strandat 226.222 kb on - strandat 226.225 kb on - strandat 226.272 kb on + strandat 226.272 kb on + strandat 226.272 kb on + strandat 226.273 kb on - strandat 226.273 kb on - strandat 226.273 kb on - strandat 226.290 kb on + strandat 226.291 kb on - strandat 226.292 kb on - strandat 226.342 kb on + strandat 226.342 kb on + strandat 226.342 kb on + strandat 226.343 kb on - strandat 226.343 kb on - strandat 226.343 kb on - strandat 226.343 kb on - strandat 226.459 kb on + strand, within GFF2632at 226.460 kb on - strand, within GFF2632at 226.460 kb on - strand, within GFF2632at 226.460 kb on - strand, within GFF2632at 226.462 kb on + strand, within GFF2632at 226.462 kb on + strand, within GFF2632at 226.462 kb on + strand, within GFF2632at 226.462 kb on + strand, within GFF2632at 226.462 kb on + strand, within GFF2632at 226.463 kb on - strand, within GFF2632at 226.463 kb on - strand, within GFF2632at 226.463 kb on - strand, within GFF2632at 226.489 kb on + strand, within GFF2632at 226.489 kb on + strand, within GFF2632at 226.490 kb on - strand, within GFF2632at 226.490 kb on - strand, within GFF2632at 226.505 kb on + strand, within GFF2632at 226.562 kb on + strand, within GFF2632at 226.613 kb on - strand, within GFF2632at 226.613 kb on - strand, within GFF2632at 226.716 kb on + strand, within GFF2632at 226.716 kb on + strand, within GFF2632at 226.717 kb on - strand, within GFF2632at 226.717 kb on - strand, within GFF2632at 226.972 kb on + strand, within GFF2632at 226.972 kb on + strand, within GFF2632at 226.982 kb on + strand, within GFF2632at 226.983 kb on - strand, within GFF2632at 226.983 kb on - strand, within GFF2632at 227.027 kb on - strand, within GFF2632at 227.037 kb on + strand, within GFF2632at 227.037 kb on + strand, within GFF2632at 227.037 kb on + strand, within GFF2632at 227.037 kb on + strand, within GFF2632at 227.037 kb on + strand, within GFF2632at 227.037 kb on + strand, within GFF2632at 227.038 kb on - strand, within GFF2632at 227.038 kb on - strand, within GFF2632at 227.087 kb on - strand, within GFF2632at 227.123 kb on + strand, within GFF2632at 227.123 kb on + strand, within GFF2632at 227.123 kb on + strand, within GFF2632at 227.124 kb on - strand, within GFF2632at 227.146 kb on + strand, within GFF2632at 227.146 kb on + strand, within GFF2632at 227.173 kb on + strand, within GFF2632at 227.173 kb on + strand, within GFF2632at 227.174 kb on - strand, within GFF2632at 227.174 kb on - strand, within GFF2632at 227.242 kb on + strand, within GFF2632at 227.242 kb on + strand, within GFF2632at 227.243 kb on - strand, within GFF2632at 227.243 kb on - strand, within GFF2632at 227.243 kb on - strand, within GFF2632

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2
remove
224,266 + GFF2630 0.50 -0.8
224,266 + GFF2630 0.50 -0.7
224,286 + GFF2630 0.51 -0.4
224,286 + GFF2630 0.51 +0.4
224,286 + GFF2630 0.51 +0.3
224,286 + GFF2630 0.51 +0.8
224,286 + GFF2630 0.51 -1.0
224,286 + GFF2630 0.51 -0.0
224,286 + GFF2630 0.51 +0.4
224,287 - GFF2630 0.51 +0.7
224,287 - GFF2630 0.51 -0.2
224,287 - GFF2630 0.51 -0.0
224,287 - GFF2630 0.51 +0.6
224,308 + GFF2630 0.52 -0.1
224,308 + GFF2630 0.52 +0.7
224,308 + GFF2630 0.52 -0.1
224,308 + GFF2630 0.52 -0.7
224,309 - GFF2630 0.52 +1.0
224,401 + GFF2630 0.58 -0.2
224,401 + GFF2630 0.58 -0.1
224,402 - GFF2630 0.58 +0.3
224,402 - GFF2630 0.58 +0.4
224,481 + GFF2630 0.63 -0.2
224,481 + GFF2630 0.63 +0.8
224,481 + GFF2630 0.63 +1.3
224,524 + GFF2630 0.66 -0.0
224,524 + GFF2630 0.66 +0.4
224,524 + GFF2630 0.66 -0.3
224,524 + GFF2630 0.66 -0.8
224,524 + GFF2630 0.66 -0.4
224,525 - GFF2630 0.66 -1.2
224,525 - GFF2630 0.66 -0.7
224,525 - GFF2630 0.66 -0.9
224,525 - GFF2630 0.66 +0.2
224,575 + GFF2630 0.69 -1.0
224,575 + GFF2630 0.69 +0.2
224,576 - GFF2630 0.69 -0.3
224,608 + GFF2630 0.72 -0.6
224,608 + GFF2630 0.72 -0.2
224,609 - GFF2630 0.72 -0.2
224,619 + GFF2630 0.72 -0.2
224,626 + GFF2630 0.73 +0.1
224,626 + GFF2630 0.73 +0.5
224,626 + GFF2630 0.73 +0.2
224,626 + GFF2630 0.73 +0.0
224,626 + GFF2630 0.73 -0.2
224,626 + GFF2630 0.73 +0.5
224,626 + GFF2630 0.73 -0.3
224,626 + GFF2630 0.73 -0.2
224,627 - GFF2630 0.73 +0.7
224,627 - GFF2630 0.73 +0.1
224,627 - GFF2630 0.73 +0.2
224,627 - GFF2630 0.73 +0.1
224,627 - GFF2630 0.73 -0.8
224,627 - GFF2630 0.73 -0.3
224,627 - GFF2630 0.73 +1.2
224,735 + GFF2630 0.80 +0.5
224,736 + GFF2630 0.80 +0.9
224,736 - GFF2630 0.80 +0.3
224,736 - GFF2630 0.80 -0.4
224,736 - GFF2630 0.80 +1.0
224,884 + GFF2630 0.89 +0.2
224,884 + GFF2630 0.89 +1.5
224,884 + GFF2630 0.89 -0.1
224,884 + GFF2630 0.89 -0.3
224,884 - GFF2630 0.89 -0.1
224,885 - GFF2630 0.89 -0.3
224,885 - GFF2630 0.89 -1.3
224,905 + -0.5
224,905 + +0.3
224,905 + +0.9
224,906 - +0.2
224,906 - -0.4
224,906 - -0.4
224,906 - +0.1
224,906 - +0.1
224,906 - -0.8
224,906 - +0.3
224,906 - -0.4
224,906 - +0.2
224,906 - -1.0
224,906 - -0.6
224,906 - +0.2
225,125 + +0.1
225,126 - +1.1
225,126 - -0.6
225,126 - -0.7
225,126 - +0.4
225,178 - -0.3
225,187 - -0.8
225,261 + +0.5
225,262 - +0.4
225,262 - +0.2
225,262 - -0.8
225,348 - GFF2631 0.13 +0.1
225,358 - GFF2631 0.14 -0.7
225,515 - GFF2631 0.29 -0.9
225,569 + GFF2631 0.34 -0.4
225,569 + GFF2631 0.34 -0.2
225,590 + GFF2631 0.36 -0.5
225,591 - GFF2631 0.36 +0.5
225,600 + GFF2631 0.37 +0.4
225,601 - GFF2631 0.37 -0.2
225,601 - GFF2631 0.37 +0.3
225,606 + GFF2631 0.37 +0.5
225,606 + GFF2631 0.37 -0.2
225,607 - GFF2631 0.37 +0.0
225,607 - GFF2631 0.37 +0.1
225,609 + GFF2631 0.38 +0.8
225,610 - GFF2631 0.38 -0.3
225,622 + GFF2631 0.39 -0.2
225,622 + GFF2631 0.39 -0.3
225,622 + GFF2631 0.39 +0.1
225,623 - GFF2631 0.39 +0.2
225,680 - GFF2631 0.44 -0.2
225,698 + GFF2631 0.46 +0.6
225,699 - GFF2631 0.46 +0.4
225,699 - GFF2631 0.46 -0.1
225,741 + GFF2631 0.50 +0.4
225,753 + GFF2631 0.51 +0.2
225,753 + GFF2631 0.51 -0.3
225,753 + GFF2631 0.51 -2.2
225,753 + GFF2631 0.51 -0.8
225,753 + GFF2631 0.51 +0.0
225,754 - GFF2631 0.51 +0.1
225,754 - GFF2631 0.51 -0.5
225,806 + GFF2631 0.56 -0.0
225,807 - GFF2631 0.56 +0.6
225,807 - GFF2631 0.56 +0.2
225,807 - GFF2631 0.56 +1.5
225,810 + GFF2631 0.56 -0.3
225,812 + GFF2631 0.57 +0.3
225,812 + GFF2631 0.57 -0.6
225,812 + GFF2631 0.57 -0.7
225,812 + GFF2631 0.57 +0.8
225,812 + GFF2631 0.57 +0.7
225,812 + GFF2631 0.57 -0.9
225,812 + GFF2631 0.57 -0.2
225,812 + GFF2631 0.57 -0.6
225,813 - GFF2631 0.57 -0.3
225,813 - GFF2631 0.57 +0.1
225,813 - GFF2631 0.57 -0.3
225,813 - GFF2631 0.57 -0.7
225,813 - GFF2631 0.57 -0.4
225,813 - GFF2631 0.57 -1.0
225,813 - GFF2631 0.57 +0.3
225,813 - GFF2631 0.57 -0.2
225,813 - GFF2631 0.57 -0.2
225,825 + GFF2631 0.58 -0.0
225,826 - GFF2631 0.58 -0.6
225,936 + GFF2631 0.68 -0.5
225,936 + GFF2631 0.68 +0.7
225,937 - GFF2631 0.68 +0.3
225,937 - GFF2631 0.68 +0.8
225,937 - GFF2631 0.68 -0.7
225,937 - GFF2631 0.68 +0.2
225,975 + GFF2631 0.72 -0.1
225,975 + GFF2631 0.72 -0.4
225,975 + GFF2631 0.72 -0.3
225,975 + GFF2631 0.72 +0.0
225,976 - GFF2631 0.72 -0.4
225,976 - GFF2631 0.72 -0.3
225,976 - GFF2631 0.72 +0.3
225,996 + GFF2631 0.74 +0.2
225,996 + GFF2631 0.74 -0.1
225,996 + GFF2631 0.74 +0.4
225,996 + GFF2631 0.74 -0.7
225,997 - GFF2631 0.74 +0.6
225,997 - GFF2631 0.74 +0.2
226,215 + -0.1
226,215 + +0.5
226,216 - +0.2
226,216 - -0.2
226,216 - +0.9
226,216 - -0.4
226,221 + +0.5
226,221 + +0.1
226,222 - -0.1
226,222 - -0.2
226,222 - -0.4
226,225 - -0.2
226,272 + -0.8
226,272 + -0.0
226,272 + -0.4
226,273 - +0.2
226,273 - +0.1
226,273 - +0.8
226,290 + -0.3
226,291 - +0.6
226,292 - -0.0
226,342 + -0.7
226,342 + +0.1
226,342 + +1.0
226,343 - +1.3
226,343 - +0.9
226,343 - -0.4
226,343 - -0.0
226,459 + GFF2632 0.16 +0.5
226,460 - GFF2632 0.16 +0.2
226,460 - GFF2632 0.16 -0.0
226,460 - GFF2632 0.16 +1.1
226,462 + GFF2632 0.17 -0.4
226,462 + GFF2632 0.17 +0.2
226,462 + GFF2632 0.17 -0.1
226,462 + GFF2632 0.17 -0.2
226,462 + GFF2632 0.17 -0.1
226,463 - GFF2632 0.17 -0.2
226,463 - GFF2632 0.17 -0.2
226,463 - GFF2632 0.17 -0.5
226,489 + GFF2632 0.19 +0.3
226,489 + GFF2632 0.19 +0.9
226,490 - GFF2632 0.19 -0.1
226,490 - GFF2632 0.19 -0.4
226,505 + GFF2632 0.21 +0.5
226,562 + GFF2632 0.26 -1.5
226,613 - GFF2632 0.30 -0.5
226,613 - GFF2632 0.30 +0.1
226,716 + GFF2632 0.39 +0.7
226,716 + GFF2632 0.39 -0.0
226,717 - GFF2632 0.40 -0.5
226,717 - GFF2632 0.40 -0.2
226,972 + GFF2632 0.62 +0.0
226,972 + GFF2632 0.62 -1.2
226,982 + GFF2632 0.63 -0.8
226,983 - GFF2632 0.63 +0.0
226,983 - GFF2632 0.63 -0.2
227,027 - GFF2632 0.67 -0.4
227,037 + GFF2632 0.68 -0.9
227,037 + GFF2632 0.68 -0.1
227,037 + GFF2632 0.68 -0.7
227,037 + GFF2632 0.68 -1.0
227,037 + GFF2632 0.68 +0.7
227,037 + GFF2632 0.68 +0.7
227,038 - GFF2632 0.68 -0.3
227,038 - GFF2632 0.68 -0.5
227,087 - GFF2632 0.73 -0.2
227,123 + GFF2632 0.76 -0.1
227,123 + GFF2632 0.76 -0.1
227,123 + GFF2632 0.76 +0.2
227,124 - GFF2632 0.76 -0.7
227,146 + GFF2632 0.78 +1.5
227,146 + GFF2632 0.78 -0.3
227,173 + GFF2632 0.80 -0.8
227,173 + GFF2632 0.80 -0.4
227,174 - GFF2632 0.80 -1.3
227,174 - GFF2632 0.80 -0.5
227,242 + GFF2632 0.87 -0.3
227,242 + GFF2632 0.87 +0.2
227,243 - GFF2632 0.87 -0.2
227,243 - GFF2632 0.87 +0.0
227,243 - GFF2632 0.87 -0.4

Or see this region's nucleotide sequence