Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2566

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
152,645	+				-1.2
152,646	-				-0.2
152,646	-				+0.6
152,646	-				+0.0
152,646	-				+0.3
152,707	+				-0.1
152,707	+				-0.1
152,708	-				-0.0
152,708	-				-0.3
152,746	-				-0.2
152,770	-				+1.1
152,803	+				+0.4
152,803	+				-0.7
152,803	+				-0.6
152,804	-				+0.9
152,804	-				+0.5
152,804	-				-0.2
152,831	+				-0.5
152,831	+				-0.5
152,842	-				-0.8
153,013	+		GFF2564	0.38	+0.5
153,013	+		GFF2564	0.38	-1.8
153,013	+		GFF2564	0.38	+0.0
153,013	+		GFF2564	0.38	-0.1
153,014	-		GFF2564	0.38	+0.8
153,394	+		GFF2565	0.39	+0.4
153,394	+		GFF2565	0.39	+0.8
153,394	+		GFF2565	0.39	+0.6
153,394	+		GFF2565	0.39	-0.1
153,394	+		GFF2565	0.39	+0.2
153,394	+		GFF2565	0.39	-0.5
153,394	+		GFF2565	0.39	+0.9
153,394	+		GFF2565	0.39	+0.6
153,394	+		GFF2565	0.39	+0.9
153,394	+		GFF2565	0.39	-0.9
153,394	+		GFF2565	0.39	-0.1
153,394	+		GFF2565	0.39	+0.4
153,394	+		GFF2565	0.39	-0.7
153,394	+		GFF2565	0.39	-0.4
153,394	+		GFF2565	0.39	-0.0
153,394	+		GFF2565	0.39	-0.6
153,395	-		GFF2565	0.40	-1.2
153,395	-		GFF2565	0.40	-0.1
153,395	-		GFF2565	0.40	-0.5
153,395	-		GFF2565	0.40	-0.3
153,395	-		GFF2565	0.40	+0.5
153,395	-		GFF2565	0.40	-0.3
153,395	-		GFF2565	0.40	+0.4
153,395	-		GFF2565	0.40	+0.6
153,426	-		GFF2565	0.64	-0.9
153,557	+				-0.9
153,558	-				-0.4
153,558	-				-1.2
153,678	-				-0.9
153,701	+				-0.7
153,701	+				-2.0
153,701	+				-0.9
153,702	-				-0.5
153,702	-				+0.2
153,731	+				-0.8
153,732	-				-0.8
153,866	+		GFF2566	0.10	-0.3
153,866	+		GFF2566	0.10	-1.2
153,867	-		GFF2566	0.10	-0.5
154,280	+		GFF2566	0.22	-0.6
154,280	+		GFF2566	0.22	-1.2
154,280	+		GFF2566	0.22	-1.3
154,280	+		GFF2566	0.22	-1.6
154,280	+		GFF2566	0.22	-0.5
154,281	-		GFF2566	0.22	-1.3
154,289	+		GFF2566	0.22	+0.5
154,289	+		GFF2566	0.22	-1.5
154,290	-		GFF2566	0.22	-2.0
154,304	+		GFF2566	0.23	-0.8
154,304	+		GFF2566	0.23	-1.4
154,304	+		GFF2566	0.23	-2.0
154,304	+		GFF2566	0.23	-1.9
154,304	+		GFF2566	0.23	-0.5
154,304	+		GFF2566	0.23	-1.5
154,304	+		GFF2566	0.23	+0.3
154,305	-		GFF2566	0.23	-1.2
154,305	-		GFF2566	0.23	-1.0
154,305	-		GFF2566	0.23	-2.7
154,305	-		GFF2566	0.23	-1.3
154,306	-		GFF2566	0.23	-0.1
154,385	+		GFF2566	0.25	-0.9
154,385	+		GFF2566	0.25	-1.1
154,385	+		GFF2566	0.25	-0.8
154,385	+		GFF2566	0.25	-0.7
154,385	+		GFF2566	0.25	-1.2
154,385	+		GFF2566	0.25	-1.0
154,386	-		GFF2566	0.25	-1.9
154,386	-		GFF2566	0.25	-1.5
154,386	-		GFF2566	0.25	-0.7
154,386	-		GFF2566	0.25	-1.5
154,386	-		GFF2566	0.25	-1.1
154,565	+		GFF2566	0.30	-1.2
154,565	+		GFF2566	0.30	-2.3
154,565	+		GFF2566	0.30	-2.4
154,566	-		GFF2566	0.30	-0.7
154,586	+		GFF2566	0.30	-0.8
154,586	+		GFF2566	0.30	-2.0
154,587	-		GFF2566	0.30	+0.0
154,587	-		GFF2566	0.30	-2.1
154,587	-		GFF2566	0.30	-0.5
154,587	-		GFF2566	0.30	-0.6
154,587	-		GFF2566	0.30	-1.2
155,096	+		GFF2566	0.45	-1.6
155,096	+		GFF2566	0.45	-2.1
155,096	+		GFF2566	0.45	-0.1
155,096	+		GFF2566	0.45	-0.1
155,097	-		GFF2566	0.45	-1.7
155,097	-		GFF2566	0.45	-1.0
155,097	-		GFF2566	0.45	+0.1
155,156	+		GFF2566	0.46	-0.5
155,156	+		GFF2566	0.46	-0.6
155,156	+		GFF2566	0.46	-0.1
155,157	-		GFF2566	0.46	-1.7
155,157	-		GFF2566	0.46	-1.5
155,157	-		GFF2566	0.46	-1.9
155,157	-		GFF2566	0.46	-0.7
155,168	+		GFF2566	0.47	-2.5
155,169	-		GFF2566	0.47	-0.8
155,306	+		GFF2566	0.50	-1.4
155,306	+		GFF2566	0.50	-1.5
155,307	-		GFF2566	0.50	-1.3
155,307	-		GFF2566	0.50	-1.2
155,307	-		GFF2566	0.50	-1.9
155,414	+		GFF2566	0.53	-0.8
155,414	+		GFF2566	0.53	-1.5
155,414	+		GFF2566	0.53	-1.6
155,414	+		GFF2566	0.53	-1.4
155,414	+		GFF2566	0.53	-0.4
155,415	-		GFF2566	0.53	-1.5
155,415	-		GFF2566	0.53	-0.8
155,415	-		GFF2566	0.53	-2.7
155,415	-		GFF2566	0.53	-0.7
155,415	-		GFF2566	0.53	-0.0
155,618	+		GFF2566	0.59	-0.6
155,618	+		GFF2566	0.59	-1.6
155,618	+		GFF2566	0.59	-1.8
155,618	+		GFF2566	0.59	-1.4
155,618	+		GFF2566	0.59	-2.0
155,619	-		GFF2566	0.59	-0.9
155,619	-		GFF2566	0.59	-1.3
155,619	-		GFF2566	0.59	-2.9
155,619	-		GFF2566	0.59	-0.8
155,619	-		GFF2566	0.59	-0.9
156,215	+		GFF2566	0.76	-1.7
156,215	+		GFF2566	0.76	-0.2
156,215	+		GFF2566	0.76	-1.8
156,216	-		GFF2566	0.76	-1.7
156,216	-		GFF2566	0.76	-1.3
156,239	+		GFF2566	0.76	-0.4
156,239	+		GFF2566	0.76	-0.4
156,240	-		GFF2566	0.76	-1.8
156,483	-		GFF2566	0.83	-1.0
156,497	+		GFF2566	0.83	-0.2
156,509	+		GFF2566	0.84	-1.1
156,510	-		GFF2566	0.84	-1.1
156,510	-		GFF2566	0.84	-0.9
156,608	+		GFF2566	0.86	+0.2
156,608	+		GFF2566	0.86	-1.6
156,608	+		GFF2566	0.86	-0.7
156,608	+		GFF2566	0.86	-1.7
156,608	+		GFF2566	0.86	-0.6
156,608	+		GFF2566	0.86	-2.7
156,608	+		GFF2566	0.86	-0.8
156,609	-		GFF2566	0.87	-1.1
156,609	-		GFF2566	0.87	-0.6
156,609	-		GFF2566	0.87	-0.6
156,620	+		GFF2566	0.87	-1.0
156,620	+		GFF2566	0.87	-0.9
156,887	+				-1.4
156,888	-				-0.1
157,116	+				-0.3
157,116	+				+0.2
157,116	+				+0.4
157,116	+				-0.2
157,116	+				+0.5
157,116	+				-0.8
157,116	+				+0.6
157,116	+				-1.3
157,116	+				-0.8
157,117	-				+0.1
157,117	-				+0.9
157,117	-				-0.6
157,117	-				-1.8
157,117	-				+0.3
157,117	-				+0.2
157,117	-				-0.1
157,117	-				-0.3
157,117	-				-0.2
157,117	-				+0.1
157,117	-				+0.5
157,233	+				+1.4
157,233	+				+1.8
157,233	+				+0.6
157,233	+				-0.1
157,234	-				+0.8
157,314	+		GFF2567	0.30	+0.5
157,314	+		GFF2567	0.30	+2.5
157,314	+		GFF2567	0.30	+1.6
157,315	-		GFF2567	0.31	+1.5
157,315	-		GFF2567	0.31	+2.0
157,315	-		GFF2567	0.31	+2.0
157,446	+		GFF2567	0.71	+2.5
157,447	-		GFF2567	0.71	+1.7