Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2559

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
147,189	+		GFF2557	0.70	+0.1
147,240	+		GFF2557	0.82	+1.0
147,240	+		GFF2557	0.82	+0.3
147,323	+				+0.4
147,324	-				+0.0
147,324	-				+0.4
147,324	-				-1.3
147,324	-				-0.0
147,395	+				+1.0
147,395	+				-0.2
147,395	+				-0.4
147,395	+				+0.1
147,395	+				+0.3
147,396	-				-0.3
147,396	-				-1.2
147,396	-				+0.2
147,533	+		GFF2558	0.19	+0.6
147,533	+		GFF2558	0.19	-0.1
147,533	-		GFF2558	0.19	-0.9
147,534	-		GFF2558	0.20	+0.3
147,534	-		GFF2558	0.20	+0.2
147,534	-		GFF2558	0.20	+0.5
147,534	-		GFF2558	0.20	+0.6
147,534	-		GFF2558	0.20	+0.7
147,952	+				+0.1
147,952	+				+0.2
147,952	+				-0.4
147,952	+				-0.9
147,952	+				+0.0
147,952	+				-0.5
147,953	-				-0.5
147,953	-				+1.3
147,953	-				-0.1
147,953	-				-0.0
148,241	+		GFF2559	0.14	-0.5
148,241	+		GFF2559	0.14	-0.6
148,241	+		GFF2559	0.14	-0.1
148,323	-		GFF2559	0.19	-0.6
148,337	+		GFF2559	0.20	-0.7
148,338	-		GFF2559	0.20	-1.7
148,338	-		GFF2559	0.20	-0.2
148,338	-		GFF2559	0.20	-0.6
148,433	+		GFF2559	0.25	+0.8
148,434	-		GFF2559	0.25	-0.2
148,616	+		GFF2559	0.35	-0.9
148,625	+		GFF2559	0.35	-0.1
148,784	+		GFF2559	0.44	-0.8
148,785	-		GFF2559	0.44	-0.2
148,785	-		GFF2559	0.44	-1.4
148,973	+		GFF2559	0.54	-0.1
148,974	-		GFF2559	0.54	+0.4
149,483	+		GFF2559	0.82	+0.3
149,483	+		GFF2559	0.82	-1.1
149,483	+		GFF2559	0.82	-0.4
149,483	+		GFF2559	0.82	-1.5
149,483	+		GFF2559	0.82	-0.3
149,483	-		GFF2559	0.82	-0.1
149,484	-		GFF2559	0.82	+0.9
149,484	-		GFF2559	0.82	-0.2
149,484	-		GFF2559	0.82	+0.2
149,484	-		GFF2559	0.82	-1.5
149,621	+		GFF2559	0.89	-0.9
149,621	+		GFF2559	0.89	+0.5
149,621	+		GFF2559	0.89	+0.2
149,622	-		GFF2559	0.89	-0.6
149,622	-		GFF2559	0.89	-0.4
149,622	-		GFF2559	0.89	-1.2
149,622	-		GFF2559	0.89	-1.4
149,622	-		GFF2559	0.89	-0.2
149,622	-		GFF2559	0.89	+0.1
149,622	-		GFF2559	0.89	+0.4
149,672	+				-1.5
149,672	+				-1.1
149,672	+				+0.2
149,672	+				-0.4
149,673	-				-0.8
149,673	-				-0.6
149,682	-				-0.2
149,771	+				-1.0
149,771	+				-1.5
149,771	+				-0.3
149,771	+				-0.6
149,772	-				-0.2
149,777	+				-0.6
149,778	-				-1.0
149,778	-				+0.0
149,778	-				+0.9
149,835	-				-0.2
150,274	+		GFF2560	0.41	-0.8
150,275	-		GFF2560	0.41	+0.5
150,544	+		GFF2560	0.74	-0.5
150,544	+		GFF2560	0.74	-0.9
150,545	-		GFF2560	0.75	-0.1
150,545	-		GFF2560	0.75	-1.8
150,545	-		GFF2560	0.75	-0.8
150,553	+		GFF2560	0.75	-0.7
150,553	+		GFF2560	0.75	-0.6
150,553	+		GFF2560	0.75	-0.8
150,554	-		GFF2560	0.76	-1.3
150,554	-		GFF2560	0.76	-0.4
150,649	+		GFF2560	0.87	+0.1
150,650	-		GFF2560	0.87	-1.5