Experiment: Ying_AminoAcid20 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2512 and GFF2513 are separated by 13 nucleotides GFF2513 and GFF2514 are separated by 82 nucleotides GFF2514 and GFF2515 are separated by 409 nucleotides GFF2515 and GFF2516 are separated by 0 nucleotides
GFF2512 - Exported zinc metalloprotease YfgC precursor, at 97,466 to 99,157
GFF2512
GFF2513 - putative membrane protein, at 99,171 to 99,533
GFF2513
GFF2514 - Membrane protein TerC, possibly involved in tellurium resistance, at 99,616 to 100,368
GFF2514
GFF2515 - Phosphoenolpyruvate synthase (EC 2.7.9.2), at 100,778 to 101,200
GFF2515
GFF2516 - CDP-abequose synthase (Fragment), at 101,201 to 101,866
GFF2516
Position (kb) 99
100
101 Strain fitness (log2 ratio) -2
-1
0
1
2 at 98.940 kb on + strand, within GFF2512 at 98.940 kb on - strand, within GFF2512 at 98.940 kb on - strand, within GFF2512 at 98.940 kb on - strand, within GFF2512 at 98.940 kb on - strand, within GFF2512 at 98.940 kb on - strand, within GFF2512 at 99.156 kb on - strand at 99.156 kb on - strand at 99.156 kb on - strand at 99.226 kb on + strand, within GFF2513 at 99.226 kb on + strand, within GFF2513 at 99.226 kb on + strand, within GFF2513 at 99.227 kb on - strand, within GFF2513 at 99.227 kb on - strand, within GFF2513 at 99.227 kb on - strand, within GFF2513 at 99.227 kb on - strand, within GFF2513 at 99.460 kb on + strand, within GFF2513 at 99.461 kb on - strand, within GFF2513 at 99.466 kb on + strand, within GFF2513 at 99.466 kb on + strand, within GFF2513 at 99.466 kb on + strand, within GFF2513 at 99.466 kb on + strand, within GFF2513 at 99.467 kb on - strand, within GFF2513 at 99.467 kb on - strand, within GFF2513 at 99.467 kb on - strand, within GFF2513 at 99.467 kb on - strand, within GFF2513 at 99.467 kb on - strand, within GFF2513 at 99.467 kb on - strand, within GFF2513 at 99.467 kb on - strand, within GFF2513 at 99.467 kb on - strand, within GFF2513 at 99.533 kb on + strand at 99.533 kb on + strand at 99.533 kb on + strand at 99.533 kb on + strand at 99.533 kb on + strand at 99.533 kb on + strand at 99.533 kb on + strand at 99.534 kb on - strand at 99.534 kb on - strand at 99.534 kb on - strand at 99.707 kb on + strand, within GFF2514 at 99.707 kb on + strand, within GFF2514 at 99.707 kb on + strand, within GFF2514 at 99.708 kb on - strand, within GFF2514 at 99.708 kb on - strand, within GFF2514 at 99.708 kb on - strand, within GFF2514 at 99.708 kb on - strand, within GFF2514 at 99.708 kb on - strand, within GFF2514 at 100.071 kb on + strand, within GFF2514 at 100.368 kb on + strand at 100.369 kb on - strand at 100.369 kb on - strand at 100.369 kb on - strand at 100.369 kb on - strand at 100.369 kb on - strand at 100.369 kb on - strand at 100.369 kb on - strand at 100.611 kb on + strand at 100.611 kb on + strand at 100.612 kb on - strand at 100.659 kb on + strand at 100.659 kb on + strand at 100.659 kb on + strand at 100.659 kb on + strand at 100.659 kb on + strand at 100.659 kb on + strand at 100.659 kb on + strand at 100.659 kb on + strand at 100.659 kb on + strand at 100.660 kb on - strand at 100.660 kb on - strand at 100.660 kb on - strand at 100.660 kb on - strand at 100.686 kb on - strand at 100.729 kb on + strand at 100.730 kb on - strand at 100.730 kb on - strand at 100.750 kb on - strand at 100.750 kb on - strand at 100.763 kb on + strand at 100.820 kb on + strand at 100.820 kb on + strand at 100.820 kb on + strand at 100.821 kb on - strand, within GFF2515 at 100.821 kb on - strand, within GFF2515 at 100.821 kb on - strand, within GFF2515 at 100.892 kb on + strand, within GFF2515 at 100.892 kb on + strand, within GFF2515 at 100.893 kb on - strand, within GFF2515 at 100.977 kb on - strand, within GFF2515 at 100.977 kb on - strand, within GFF2515 at 100.977 kb on - strand, within GFF2515 at 101.159 kb on + strand at 101.160 kb on - strand at 101.217 kb on + strand at 101.218 kb on - strand at 101.218 kb on - strand at 101.218 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2 remove 98,940 + GFF2512 0.87 -1.1 98,940 - GFF2512 0.87 -1.1 98,940 - GFF2512 0.87 +1.2 98,940 - GFF2512 0.87 -1.8 98,940 - GFF2512 0.87 -1.1 98,940 - GFF2512 0.87 -0.5 99,156 - +0.5 99,156 - +0.5 99,156 - -0.6 99,226 + GFF2513 0.15 +0.1 99,226 + GFF2513 0.15 +0.2 99,226 + GFF2513 0.15 +0.1 99,227 - GFF2513 0.15 -0.1 99,227 - GFF2513 0.15 +0.8 99,227 - GFF2513 0.15 +0.4 99,227 - GFF2513 0.15 +0.3 99,460 + GFF2513 0.80 +0.3 99,461 - GFF2513 0.80 +0.3 99,466 + GFF2513 0.81 +0.4 99,466 + GFF2513 0.81 +1.3 99,466 + GFF2513 0.81 -0.1 99,466 + GFF2513 0.81 -0.1 99,467 - GFF2513 0.82 +0.1 99,467 - GFF2513 0.82 +0.1 99,467 - GFF2513 0.82 +0.0 99,467 - GFF2513 0.82 -0.6 99,467 - GFF2513 0.82 -0.9 99,467 - GFF2513 0.82 -0.1 99,467 - GFF2513 0.82 +0.6 99,467 - GFF2513 0.82 -0.2 99,533 + +0.3 99,533 + +0.3 99,533 + +1.1 99,533 + +0.0 99,533 + +0.2 99,533 + +0.8 99,533 + +0.0 99,534 - +0.2 99,534 - -0.5 99,534 - -0.2 99,707 + GFF2514 0.12 -0.6 99,707 + GFF2514 0.12 +0.2 99,707 + GFF2514 0.12 -0.9 99,708 - GFF2514 0.12 -0.4 99,708 - GFF2514 0.12 -0.0 99,708 - GFF2514 0.12 -0.4 99,708 - GFF2514 0.12 -0.3 99,708 - GFF2514 0.12 +0.2 100,071 + GFF2514 0.60 -0.0 100,368 + -0.1 100,369 - -0.7 100,369 - -0.1 100,369 - -0.3 100,369 - -0.3 100,369 - +0.3 100,369 - +1.5 100,369 - -0.0 100,611 + +0.4 100,611 + -0.1 100,612 - +0.1 100,659 + +0.0 100,659 + +0.7 100,659 + -0.6 100,659 + +0.5 100,659 + +0.7 100,659 + +0.1 100,659 + +0.3 100,659 + -0.3 100,659 + -0.4 100,660 - +1.5 100,660 - -0.5 100,660 - +1.1 100,660 - +0.2 100,686 - +0.1 100,729 + -0.1 100,730 - -0.1 100,730 - +0.7 100,750 - +2.1 100,750 - -0.6 100,763 + +1.5 100,820 + -0.3 100,820 + -0.3 100,820 + +0.9 100,821 - GFF2515 0.10 +0.4 100,821 - GFF2515 0.10 +0.2 100,821 - GFF2515 0.10 -0.2 100,892 + GFF2515 0.27 -0.3 100,892 + GFF2515 0.27 -0.1 100,893 - GFF2515 0.27 +0.8 100,977 - GFF2515 0.47 +0.2 100,977 - GFF2515 0.47 +0.0 100,977 - GFF2515 0.47 +0.2 101,159 + -0.8 101,160 - +0.1 101,217 + +0.4 101,218 - -1.1 101,218 - -0.1 101,218 - +0.0
Or see this region's nucleotide sequence