Experiment: Ying_AminoAcid20 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2418 and GFF2419 are separated by 386 nucleotides GFF2419 and GFF2420 are separated by 19 nucleotides
GFF2418 - Response regulator, at 63,476 to 64,237
GFF2418
GFF2419 - Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91) # Periplasmic precursor, at 64,624 to 65,019
GFF2419
GFF2420 - Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-), at 65,039 to 67,480
GFF2420
Position (kb) 64
65
66 Strain fitness (log2 ratio) -1
0
1 at 63.644 kb on + strand, within GFF2418 at 63.644 kb on + strand, within GFF2418 at 63.645 kb on - strand, within GFF2418 at 63.710 kb on + strand, within GFF2418 at 63.710 kb on + strand, within GFF2418 at 63.711 kb on - strand, within GFF2418 at 63.711 kb on - strand, within GFF2418 at 64.005 kb on + strand, within GFF2418 at 64.005 kb on + strand, within GFF2418 at 64.006 kb on - strand, within GFF2418 at 64.023 kb on - strand, within GFF2418 at 64.234 kb on - strand at 64.346 kb on + strand at 64.483 kb on - strand at 64.484 kb on - strand at 64.578 kb on + strand at 64.621 kb on + strand at 64.733 kb on + strand, within GFF2419 at 64.804 kb on + strand, within GFF2419 at 64.805 kb on - strand, within GFF2419 at 64.805 kb on - strand, within GFF2419 at 64.811 kb on - strand, within GFF2419 at 64.847 kb on + strand, within GFF2419 at 64.847 kb on + strand, within GFF2419 at 65.017 kb on + strand at 65.018 kb on - strand at 65.436 kb on + strand, within GFF2420 at 65.592 kb on + strand, within GFF2420 at 65.593 kb on - strand, within GFF2420 at 65.593 kb on - strand, within GFF2420 at 65.594 kb on - strand, within GFF2420 at 65.630 kb on + strand, within GFF2420 at 65.792 kb on - strand, within GFF2420 at 65.795 kb on + strand, within GFF2420 at 65.795 kb on + strand, within GFF2420 at 65.795 kb on + strand, within GFF2420 at 65.795 kb on + strand, within GFF2420 at 65.795 kb on + strand, within GFF2420 at 65.796 kb on - strand, within GFF2420 at 65.796 kb on - strand, within GFF2420 at 65.871 kb on + strand, within GFF2420 at 65.872 kb on - strand, within GFF2420 at 65.885 kb on + strand, within GFF2420 at 65.886 kb on - strand, within GFF2420 at 65.891 kb on + strand, within GFF2420 at 65.892 kb on - strand, within GFF2420
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2 remove 63,644 + GFF2418 0.22 +1.1 63,644 + GFF2418 0.22 +0.4 63,645 - GFF2418 0.22 -0.1 63,710 + GFF2418 0.31 -0.5 63,710 + GFF2418 0.31 -0.4 63,711 - GFF2418 0.31 +0.3 63,711 - GFF2418 0.31 -0.9 64,005 + GFF2418 0.69 -0.9 64,005 + GFF2418 0.69 +0.3 64,006 - GFF2418 0.70 -0.2 64,023 - GFF2418 0.72 +0.1 64,234 - -0.9 64,346 + +0.2 64,483 - -0.7 64,484 - +1.3 64,578 + +0.0 64,621 + +0.1 64,733 + GFF2419 0.28 +0.9 64,804 + GFF2419 0.45 -0.4 64,805 - GFF2419 0.46 +0.0 64,805 - GFF2419 0.46 +0.1 64,811 - GFF2419 0.47 +0.7 64,847 + GFF2419 0.56 +1.0 64,847 + GFF2419 0.56 +0.3 65,017 + -0.1 65,018 - -0.0 65,436 + GFF2420 0.16 +0.5 65,592 + GFF2420 0.23 +0.6 65,593 - GFF2420 0.23 -0.2 65,593 - GFF2420 0.23 -0.9 65,594 - GFF2420 0.23 -0.1 65,630 + GFF2420 0.24 -0.4 65,792 - GFF2420 0.31 -0.3 65,795 + GFF2420 0.31 +0.4 65,795 + GFF2420 0.31 -0.3 65,795 + GFF2420 0.31 +1.0 65,795 + GFF2420 0.31 +0.7 65,795 + GFF2420 0.31 -0.1 65,796 - GFF2420 0.31 -0.7 65,796 - GFF2420 0.31 -0.6 65,871 + GFF2420 0.34 +0.2 65,872 - GFF2420 0.34 -0.1 65,885 + GFF2420 0.35 -0.2 65,886 - GFF2420 0.35 -0.2 65,891 + GFF2420 0.35 +0.1 65,892 - GFF2420 0.35 -0.2
Or see this region's nucleotide sequence