Experiment: Ying_AminoAcid20 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2389 and GFF2390 overlap by 4 nucleotides GFF2390 and GFF2391 are separated by 12 nucleotides GFF2391 and GFF2392 are separated by 47 nucleotides
GFF2389 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 31,644 to 32,402
GFF2389
GFF2390 - Alkanesulfonates transport system permease protein, at 32,399 to 33,187
GFF2390
GFF2391 - Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB, at 33,200 to 33,958
GFF2391
GFF2392 - ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components, at 34,006 to 35,055
GFF2392
Position (kb) 33
34 Strain fitness (log2 ratio) -1
0
1
2 at 32.479 kb on - strand, within GFF2390 at 32.724 kb on + strand, within GFF2390 at 32.725 kb on - strand, within GFF2390 at 32.856 kb on - strand, within GFF2390 at 32.890 kb on + strand, within GFF2390 at 32.977 kb on - strand, within GFF2390 at 32.977 kb on - strand, within GFF2390 at 33.072 kb on + strand, within GFF2390 at 33.246 kb on + strand at 33.875 kb on + strand, within GFF2391 at 34.208 kb on + strand, within GFF2392 at 34.209 kb on - strand, within GFF2392 at 34.274 kb on + strand, within GFF2392 at 34.274 kb on + strand, within GFF2392 at 34.274 kb on + strand, within GFF2392 at 34.481 kb on + strand, within GFF2392 at 34.481 kb on + strand, within GFF2392 at 34.481 kb on + strand, within GFF2392 at 34.481 kb on + strand, within GFF2392 at 34.481 kb on + strand, within GFF2392 at 34.535 kb on + strand, within GFF2392 at 34.559 kb on + strand, within GFF2392 at 34.559 kb on + strand, within GFF2392 at 34.560 kb on - strand, within GFF2392 at 34.560 kb on - strand, within GFF2392 at 34.560 kb on - strand, within GFF2392 at 34.644 kb on - strand, within GFF2392 at 34.802 kb on + strand, within GFF2392 at 34.803 kb on - strand, within GFF2392 at 34.803 kb on - strand, within GFF2392 at 34.803 kb on - strand, within GFF2392 at 34.803 kb on - strand, within GFF2392 at 34.803 kb on - strand, within GFF2392 at 34.823 kb on + strand, within GFF2392 at 34.823 kb on + strand, within GFF2392 at 34.824 kb on - strand, within GFF2392
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2 remove 32,479 - GFF2390 0.10 +0.1 32,724 + GFF2390 0.41 -0.0 32,725 - GFF2390 0.41 -0.6 32,856 - GFF2390 0.58 +0.2 32,890 + GFF2390 0.62 +0.2 32,977 - GFF2390 0.73 +0.4 32,977 - GFF2390 0.73 -0.7 33,072 + GFF2390 0.85 -0.1 33,246 + -0.3 33,875 + GFF2391 0.89 -0.6 34,208 + GFF2392 0.19 +0.5 34,209 - GFF2392 0.19 -0.0 34,274 + GFF2392 0.26 +0.4 34,274 + GFF2392 0.26 +0.3 34,274 + GFF2392 0.26 -0.1 34,481 + GFF2392 0.45 -0.3 34,481 + GFF2392 0.45 +1.0 34,481 + GFF2392 0.45 +1.2 34,481 + GFF2392 0.45 -0.7 34,481 + GFF2392 0.45 +1.3 34,535 + GFF2392 0.50 +2.2 34,559 + GFF2392 0.53 -0.7 34,559 + GFF2392 0.53 -0.6 34,560 - GFF2392 0.53 +0.2 34,560 - GFF2392 0.53 +0.1 34,560 - GFF2392 0.53 -0.2 34,644 - GFF2392 0.61 -0.8 34,802 + GFF2392 0.76 +0.4 34,803 - GFF2392 0.76 -1.3 34,803 - GFF2392 0.76 -0.3 34,803 - GFF2392 0.76 +1.9 34,803 - GFF2392 0.76 +0.9 34,803 - GFF2392 0.76 -0.2 34,823 + GFF2392 0.78 -0.1 34,823 + GFF2392 0.78 +1.7 34,824 - GFF2392 0.78 +1.6
Or see this region's nucleotide sequence