Experiment: Ying_AminoAcid20 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2300 and GFF2301 are separated by 20 nucleotides GFF2301 and GFF2302 are separated by 319 nucleotides GFF2302 and GFF2303 overlap by 4 nucleotides
GFF2300 - Outer membrane protein (porin), at 1,185,237 to 1,186,457
GFF2300
GFF2301 - hypothetical protein, at 1,186,478 to 1,186,846
GFF2301
GFF2302 - hypothetical protein, at 1,187,166 to 1,187,603
GFF2302
GFF2303 - hypothetical protein, at 1,187,600 to 1,187,926
GFF2303
Position (kb) 1186
1187 Strain fitness (log2 ratio) -1
0
1 at 1185.493 kb on - strand, within GFF2300 at 1185.766 kb on - strand, within GFF2300 at 1185.766 kb on - strand, within GFF2300 at 1185.945 kb on + strand, within GFF2300 at 1185.945 kb on + strand, within GFF2300 at 1185.946 kb on - strand, within GFF2300 at 1185.946 kb on - strand, within GFF2300 at 1185.946 kb on - strand, within GFF2300 at 1185.946 kb on - strand, within GFF2300 at 1186.098 kb on + strand, within GFF2300 at 1186.098 kb on + strand, within GFF2300 at 1186.140 kb on + strand, within GFF2300 at 1186.140 kb on + strand, within GFF2300 at 1186.140 kb on + strand, within GFF2300 at 1186.140 kb on + strand, within GFF2300 at 1186.141 kb on - strand, within GFF2300 at 1186.141 kb on - strand, within GFF2300 at 1186.141 kb on - strand, within GFF2300 at 1186.174 kb on - strand, within GFF2300 at 1186.174 kb on - strand, within GFF2300 at 1186.344 kb on + strand at 1186.344 kb on + strand at 1186.344 kb on + strand at 1186.345 kb on - strand at 1186.345 kb on - strand at 1186.566 kb on + strand, within GFF2301 at 1186.620 kb on + strand, within GFF2301 at 1186.621 kb on - strand, within GFF2301 at 1186.684 kb on - strand, within GFF2301 at 1186.684 kb on - strand, within GFF2301 at 1186.684 kb on - strand, within GFF2301 at 1187.150 kb on - strand at 1187.152 kb on - strand at 1187.168 kb on - strand at 1187.168 kb on - strand at 1187.548 kb on + strand, within GFF2302 at 1187.549 kb on - strand, within GFF2302 at 1187.814 kb on + strand, within GFF2303 at 1187.814 kb on + strand, within GFF2303 at 1187.814 kb on + strand, within GFF2303 at 1187.814 kb on + strand, within GFF2303 at 1187.814 kb on + strand, within GFF2303 at 1187.814 kb on + strand, within GFF2303 at 1187.814 kb on + strand, within GFF2303 at 1187.814 kb on + strand, within GFF2303 at 1187.815 kb on - strand, within GFF2303 at 1187.815 kb on - strand, within GFF2303 at 1187.815 kb on - strand, within GFF2303 at 1187.815 kb on - strand, within GFF2303 at 1187.815 kb on - strand, within GFF2303 at 1187.815 kb on - strand, within GFF2303 at 1187.815 kb on - strand, within GFF2303
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2 remove 1,185,493 - GFF2300 0.21 -0.5 1,185,766 - GFF2300 0.43 -0.1 1,185,766 - GFF2300 0.43 -0.1 1,185,945 + GFF2300 0.58 +0.0 1,185,945 + GFF2300 0.58 +0.1 1,185,946 - GFF2300 0.58 +0.2 1,185,946 - GFF2300 0.58 -0.2 1,185,946 - GFF2300 0.58 +0.6 1,185,946 - GFF2300 0.58 +0.1 1,186,098 + GFF2300 0.71 +0.2 1,186,098 + GFF2300 0.71 -0.0 1,186,140 + GFF2300 0.74 -0.9 1,186,140 + GFF2300 0.74 -0.9 1,186,140 + GFF2300 0.74 +0.6 1,186,140 + GFF2300 0.74 +0.4 1,186,141 - GFF2300 0.74 -0.7 1,186,141 - GFF2300 0.74 -0.4 1,186,141 - GFF2300 0.74 +0.4 1,186,174 - GFF2300 0.77 +1.1 1,186,174 - GFF2300 0.77 +0.8 1,186,344 + +1.2 1,186,344 + +0.4 1,186,344 + -0.3 1,186,345 - +0.1 1,186,345 - +0.2 1,186,566 + GFF2301 0.24 +0.2 1,186,620 + GFF2301 0.38 +0.6 1,186,621 - GFF2301 0.39 -0.0 1,186,684 - GFF2301 0.56 -0.5 1,186,684 - GFF2301 0.56 +0.2 1,186,684 - GFF2301 0.56 +1.1 1,187,150 - +0.9 1,187,152 - -0.0 1,187,168 - -0.3 1,187,168 - +0.7 1,187,548 + GFF2302 0.87 -0.6 1,187,549 - GFF2302 0.87 +0.2 1,187,814 + GFF2303 0.65 -1.0 1,187,814 + GFF2303 0.65 +0.1 1,187,814 + GFF2303 0.65 +0.5 1,187,814 + GFF2303 0.65 +1.3 1,187,814 + GFF2303 0.65 +0.1 1,187,814 + GFF2303 0.65 +0.4 1,187,814 + GFF2303 0.65 -0.5 1,187,814 + GFF2303 0.65 +0.0 1,187,815 - GFF2303 0.66 +0.0 1,187,815 - GFF2303 0.66 -0.3 1,187,815 - GFF2303 0.66 +0.6 1,187,815 - GFF2303 0.66 -0.2 1,187,815 - GFF2303 0.66 -0.0 1,187,815 - GFF2303 0.66 -0.4 1,187,815 - GFF2303 0.66 -0.3
Or see this region's nucleotide sequence