Experiment: Ying_AminoAcid20 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2005 and GFF2006 are separated by 226 nucleotides GFF2006 and GFF2007 overlap by 18 nucleotides GFF2007 and GFF2008 overlap by 45 nucleotides GFF2008 and GFF2009 are separated by 584 nucleotides
GFF2005 - ATP:Cob(I)alamin adenosyltransferase (EC 2.5.1.17), at 880,724 to 881,290
GFF2005
GFF2006 - hypothetical protein, at 881,517 to 881,717
GFF2006
GFF2007 - hypothetical protein, at 881,700 to 881,828
GFF2007
GFF2008 - D-Lactate dehydrogenase, cytochrome c-dependent (EC 1.1.2.4), at 881,784 to 883,208
GFF2008
GFF2009 - Sensor histidine kinase, at 883,793 to 885,670
GFF2009
Position (kb) 881
882
883
884 Strain fitness (log2 ratio) -1
0
1 at 880.839 kb on + strand, within GFF2005 at 880.840 kb on - strand, within GFF2005 at 880.840 kb on - strand, within GFF2005 at 881.100 kb on + strand, within GFF2005 at 881.453 kb on + strand at 881.453 kb on + strand at 881.453 kb on + strand at 881.453 kb on + strand at 881.454 kb on - strand at 881.454 kb on - strand at 881.454 kb on - strand at 881.701 kb on + strand at 881.701 kb on + strand at 881.701 kb on + strand at 881.702 kb on - strand at 881.741 kb on + strand, within GFF2007 at 881.741 kb on + strand, within GFF2007 at 881.937 kb on + strand, within GFF2008 at 881.937 kb on + strand, within GFF2008 at 881.937 kb on + strand, within GFF2008 at 881.937 kb on + strand, within GFF2008 at 881.938 kb on - strand, within GFF2008 at 882.393 kb on + strand, within GFF2008 at 882.393 kb on + strand, within GFF2008 at 882.465 kb on + strand, within GFF2008 at 882.465 kb on + strand, within GFF2008 at 882.466 kb on - strand, within GFF2008 at 882.798 kb on + strand, within GFF2008 at 882.798 kb on + strand, within GFF2008 at 882.798 kb on + strand, within GFF2008 at 882.799 kb on - strand, within GFF2008 at 882.799 kb on - strand, within GFF2008 at 882.924 kb on + strand, within GFF2008 at 882.924 kb on + strand, within GFF2008 at 882.924 kb on + strand, within GFF2008 at 883.205 kb on - strand at 883.206 kb on + strand at 883.206 kb on + strand at 883.206 kb on + strand at 883.206 kb on + strand at 883.207 kb on - strand at 883.207 kb on - strand at 883.207 kb on - strand at 883.207 kb on - strand at 883.207 kb on - strand at 883.207 kb on - strand at 883.350 kb on + strand at 883.350 kb on + strand at 883.350 kb on + strand at 883.351 kb on - strand at 883.351 kb on - strand at 883.351 kb on - strand at 883.351 kb on - strand at 883.351 kb on - strand at 883.352 kb on + strand at 883.352 kb on + strand at 883.352 kb on + strand at 883.352 kb on + strand at 883.352 kb on + strand at 883.352 kb on + strand at 883.353 kb on - strand at 883.353 kb on - strand at 883.353 kb on - strand at 883.353 kb on - strand at 883.353 kb on - strand at 883.353 kb on - strand at 883.353 kb on - strand at 883.353 kb on - strand at 883.353 kb on - strand at 883.353 kb on - strand at 883.353 kb on - strand at 883.353 kb on - strand at 883.353 kb on - strand at 883.353 kb on - strand at 883.353 kb on - strand at 883.353 kb on - strand at 883.377 kb on + strand at 883.378 kb on - strand at 883.496 kb on + strand at 883.497 kb on - strand at 883.521 kb on + strand at 883.521 kb on + strand at 883.521 kb on + strand at 883.522 kb on - strand at 883.522 kb on - strand at 883.522 kb on - strand at 883.522 kb on - strand at 883.522 kb on - strand at 883.522 kb on - strand at 883.523 kb on + strand at 883.523 kb on + strand at 883.523 kb on + strand at 883.523 kb on + strand at 883.523 kb on + strand at 883.524 kb on - strand at 883.524 kb on - strand at 883.524 kb on - strand at 883.524 kb on - strand at 883.525 kb on - strand at 883.529 kb on - strand at 883.544 kb on + strand at 883.544 kb on + strand at 883.544 kb on + strand at 883.544 kb on + strand at 883.545 kb on - strand at 883.545 kb on - strand at 883.545 kb on - strand at 883.545 kb on - strand at 883.545 kb on - strand at 883.653 kb on - strand at 883.689 kb on + strand at 883.702 kb on + strand at 883.702 kb on + strand at 883.702 kb on + strand at 883.703 kb on - strand at 883.706 kb on + strand at 883.706 kb on + strand at 883.706 kb on + strand at 883.706 kb on + strand at 883.706 kb on + strand at 883.706 kb on + strand at 883.706 kb on + strand at 883.706 kb on + strand at 883.706 kb on + strand at 883.706 kb on + strand at 883.706 kb on + strand at 883.706 kb on + strand at 883.706 kb on + strand at 883.706 kb on + strand at 883.706 kb on + strand at 883.706 kb on + strand at 883.706 kb on + strand at 883.707 kb on - strand at 883.707 kb on - strand at 883.707 kb on - strand at 883.707 kb on - strand at 883.707 kb on - strand at 883.707 kb on - strand at 883.715 kb on + strand at 883.715 kb on + strand at 883.715 kb on + strand at 883.715 kb on + strand at 883.715 kb on + strand at 883.715 kb on + strand at 883.716 kb on - strand at 883.716 kb on - strand at 883.716 kb on - strand at 883.716 kb on - strand at 883.716 kb on - strand at 883.716 kb on - strand at 883.720 kb on - strand at 883.720 kb on - strand at 883.763 kb on + strand at 883.763 kb on + strand at 883.763 kb on + strand at 883.763 kb on + strand at 883.764 kb on - strand at 883.764 kb on - strand at 883.764 kb on - strand at 883.899 kb on + strand at 883.899 kb on + strand at 883.899 kb on + strand at 883.899 kb on + strand at 883.900 kb on - strand at 883.900 kb on - strand at 883.900 kb on - strand at 883.900 kb on - strand at 883.900 kb on - strand at 883.900 kb on - strand at 883.900 kb on - strand at 883.900 kb on - strand at 883.900 kb on - strand at 884.076 kb on + strand, within GFF2009 at 884.076 kb on + strand, within GFF2009 at 884.160 kb on + strand, within GFF2009 at 884.161 kb on - strand, within GFF2009
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2 remove 880,839 + GFF2005 0.20 +0.3 880,840 - GFF2005 0.20 +0.2 880,840 - GFF2005 0.20 -0.2 881,100 + GFF2005 0.66 +0.7 881,453 + -0.6 881,453 + -0.1 881,453 + +0.1 881,453 + -0.5 881,454 - -0.7 881,454 - +0.2 881,454 - -0.2 881,701 + +0.0 881,701 + -0.3 881,701 + -0.2 881,702 - +0.7 881,741 + GFF2007 0.32 -0.5 881,741 + GFF2007 0.32 -0.3 881,937 + GFF2008 0.11 +0.1 881,937 + GFF2008 0.11 -0.4 881,937 + GFF2008 0.11 -0.2 881,937 + GFF2008 0.11 -0.1 881,938 - GFF2008 0.11 -0.0 882,393 + GFF2008 0.43 -0.2 882,393 + GFF2008 0.43 +0.0 882,465 + GFF2008 0.48 -0.8 882,465 + GFF2008 0.48 +0.4 882,466 - GFF2008 0.48 -0.1 882,798 + GFF2008 0.71 -1.0 882,798 + GFF2008 0.71 -1.0 882,798 + GFF2008 0.71 -0.1 882,799 - GFF2008 0.71 -0.5 882,799 - GFF2008 0.71 -0.2 882,924 + GFF2008 0.80 +0.9 882,924 + GFF2008 0.80 -0.1 882,924 + GFF2008 0.80 -0.3 883,205 - +0.1 883,206 + -0.0 883,206 + -0.4 883,206 + -0.4 883,206 + -1.1 883,207 - -0.5 883,207 - +0.7 883,207 - -0.2 883,207 - -0.7 883,207 - -0.3 883,207 - -0.1 883,350 + +0.4 883,350 + +0.3 883,350 + -0.4 883,351 - -0.1 883,351 - -1.0 883,351 - +0.1 883,351 - +1.0 883,351 - +0.1 883,352 + -0.1 883,352 + +0.1 883,352 + +1.1 883,352 + -0.2 883,352 + +1.6 883,352 + +0.7 883,353 - -0.0 883,353 - -0.7 883,353 - +0.1 883,353 - -0.0 883,353 - -0.2 883,353 - -0.7 883,353 - +0.4 883,353 - -0.0 883,353 - -0.1 883,353 - -0.3 883,353 - -0.4 883,353 - -0.3 883,353 - +0.1 883,353 - +0.1 883,353 - +0.1 883,353 - +0.6 883,377 + -0.8 883,378 - +0.2 883,496 + -0.2 883,497 - +0.8 883,521 + +0.6 883,521 + +1.0 883,521 + -0.1 883,522 - +0.1 883,522 - -0.2 883,522 - -0.3 883,522 - -0.5 883,522 - +0.6 883,522 - +0.2 883,523 + -0.1 883,523 + -0.8 883,523 + +0.5 883,523 + +0.0 883,523 + +1.1 883,524 - -0.0 883,524 - -0.0 883,524 - -0.0 883,524 - -0.5 883,525 - -0.0 883,529 - +0.7 883,544 + +0.1 883,544 + +0.3 883,544 + +0.1 883,544 + -0.3 883,545 - -0.0 883,545 - -0.1 883,545 - -0.3 883,545 - -0.8 883,545 - +0.8 883,653 - -0.1 883,689 + +0.4 883,702 + -0.7 883,702 + -0.3 883,702 + +0.2 883,703 - +0.2 883,706 + +0.4 883,706 + +0.1 883,706 + -0.3 883,706 + +0.2 883,706 + -0.1 883,706 + -0.1 883,706 + -0.3 883,706 + -0.0 883,706 + -0.0 883,706 + +0.7 883,706 + -0.6 883,706 + -0.1 883,706 + +0.4 883,706 + -0.3 883,706 + +0.2 883,706 + +0.2 883,706 + -0.2 883,707 - -0.3 883,707 - -0.1 883,707 - -0.0 883,707 - -0.1 883,707 - -0.6 883,707 - +0.0 883,715 + -0.5 883,715 + -0.1 883,715 + +0.1 883,715 + -0.3 883,715 + -0.3 883,715 + +0.1 883,716 - -0.4 883,716 - -1.4 883,716 - +0.1 883,716 - +0.0 883,716 - -0.1 883,716 - -1.0 883,720 - -0.3 883,720 - +0.0 883,763 + +0.2 883,763 + +0.2 883,763 + +0.6 883,763 + -0.2 883,764 - +0.6 883,764 - -0.6 883,764 - -1.0 883,899 + -0.1 883,899 + +0.1 883,899 + -1.1 883,899 + -0.0 883,900 - -0.3 883,900 - -0.1 883,900 - +0.2 883,900 - -0.5 883,900 - -0.3 883,900 - +0.0 883,900 - -0.5 883,900 - -0.1 883,900 - -0.6 884,076 + GFF2009 0.15 -0.2 884,076 + GFF2009 0.15 -1.3 884,160 + GFF2009 0.20 +0.1 884,161 - GFF2009 0.20 -0.5
Or see this region's nucleotide sequence