Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1953

Experiment: Ying_AminoAcid20 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 2
826,224	+				-2.8
826,252	+				-0.3
826,252	+				+1.3
826,252	+				+0.8
826,252	+				-0.2
826,253	-				-0.2
826,253	-				-0.5
826,253	-				-0.5
826,253	-				+0.1
826,253	-				+1.1
826,356	+				-0.0
826,356	+				-1.6
826,356	+				-0.3
826,423	+				+0.4
826,437	+				-0.1
826,438	-				-0.4
826,438	-				+1.2
826,438	-				-0.4
826,535	+		GFF1953	0.27	-0.1
826,542	+		GFF1953	0.28	-0.3
826,649	-		GFF1953	0.49	-0.9
826,967	+				+0.1
826,967	+				+0.8
826,967	+				+0.2
826,967	+				-0.2
826,967	+				+0.6
826,967	+				+0.8
826,967	+				+0.1
826,968	-				+1.9
826,968	-				+0.2
826,968	-				-0.0
826,968	-				+0.2
826,968	-				+0.5
827,431	+		GFF1954	0.79	-0.2
827,431	+		GFF1954	0.79	+0.8
827,431	+		GFF1954	0.79	-0.2
827,432	-		GFF1954	0.79	+0.6
827,432	-		GFF1954	0.79	+0.4
827,432	-		GFF1954	0.79	-0.8
827,563	+				+0.2
827,563	+				+0.1
827,564	-				-0.1
827,564	-				+0.3
827,802	-		GFF1955	0.38	-0.6