Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1903

Experiment: Ying_AminoAcid20 rep B; time point 2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1902 and GFF1903 are separated by 14 nucleotidesGFF1903 and GFF1904 are separated by 561 nucleotides GFF1902 - hypothetical protein, at 767,015 to 770,053 GFF1902 GFF1903 - hypothetical protein, at 770,068 to 778,413 GFF1903 GFF1904 - Hydrogen peroxide-inducible genes activator, at 778,975 to 779,892 GFF1904 Position (kb) 770 771 772 773 774 775 776 777 778 779Strain fitness (log2 ratio) -2 -1 0 1 2at 769.263 kb on + strand, within GFF1902at 769.263 kb on + strand, within GFF1902at 769.264 kb on - strand, within GFF1902at 769.323 kb on + strand, within GFF1902at 769.384 kb on - strand, within GFF1902at 769.677 kb on + strand, within GFF1902at 769.678 kb on - strand, within GFF1902at 770.379 kb on - strandat 770.654 kb on + strandat 770.655 kb on - strandat 770.852 kb on + strandat 770.853 kb on - strandat 770.853 kb on - strandat 770.993 kb on + strand, within GFF1903at 770.994 kb on - strand, within GFF1903at 770.994 kb on - strand, within GFF1903at 770.994 kb on - strand, within GFF1903at 771.044 kb on + strand, within GFF1903at 771.045 kb on - strand, within GFF1903at 771.140 kb on + strand, within GFF1903at 771.179 kb on + strand, within GFF1903at 771.179 kb on + strand, within GFF1903at 771.180 kb on - strand, within GFF1903at 771.230 kb on + strand, within GFF1903at 771.230 kb on + strand, within GFF1903at 771.329 kb on + strand, within GFF1903at 771.464 kb on + strand, within GFF1903at 771.465 kb on - strand, within GFF1903at 772.104 kb on - strand, within GFF1903at 772.104 kb on - strand, within GFF1903at 772.160 kb on + strand, within GFF1903at 772.161 kb on - strand, within GFF1903at 772.161 kb on - strand, within GFF1903at 772.239 kb on - strand, within GFF1903at 772.403 kb on + strand, within GFF1903at 772.433 kb on + strand, within GFF1903at 772.463 kb on + strand, within GFF1903at 772.463 kb on + strand, within GFF1903at 772.463 kb on + strand, within GFF1903at 772.832 kb on + strand, within GFF1903at 772.833 kb on - strand, within GFF1903at 772.964 kb on + strand, within GFF1903at 772.965 kb on - strand, within GFF1903at 772.965 kb on - strand, within GFF1903at 773.174 kb on + strand, within GFF1903at 773.175 kb on - strand, within GFF1903at 773.175 kb on - strand, within GFF1903at 773.208 kb on - strand, within GFF1903at 773.487 kb on - strand, within GFF1903at 773.487 kb on - strand, within GFF1903at 773.636 kb on + strand, within GFF1903at 773.831 kb on + strand, within GFF1903at 774.113 kb on + strand, within GFF1903at 774.125 kb on + strand, within GFF1903at 774.170 kb on + strand, within GFF1903at 774.170 kb on + strand, within GFF1903at 774.170 kb on + strand, within GFF1903at 774.171 kb on - strand, within GFF1903at 774.171 kb on - strand, within GFF1903at 774.171 kb on - strand, within GFF1903at 774.411 kb on - strand, within GFF1903at 774.411 kb on - strand, within GFF1903at 774.411 kb on - strand, within GFF1903at 774.411 kb on - strand, within GFF1903at 774.797 kb on + strand, within GFF1903at 775.190 kb on + strand, within GFF1903at 775.191 kb on - strand, within GFF1903at 776.270 kb on + strand, within GFF1903at 776.271 kb on - strand, within GFF1903at 776.375 kb on + strand, within GFF1903at 776.376 kb on - strand, within GFF1903at 776.376 kb on - strand, within GFF1903at 776.996 kb on + strand, within GFF1903at 776.997 kb on - strand, within GFF1903at 776.997 kb on - strand, within GFF1903at 777.842 kb on + strandat 777.842 kb on + strandat 777.842 kb on + strandat 777.842 kb on + strandat 777.842 kb on + strandat 777.842 kb on + strandat 777.842 kb on + strandat 777.842 kb on + strandat 777.842 kb on + strandat 777.843 kb on - strandat 777.843 kb on - strandat 777.843 kb on - strandat 778.037 kb on + strandat 778.038 kb on - strandat 778.038 kb on - strandat 778.038 kb on - strandat 778.211 kb on + strandat 778.212 kb on - strandat 778.212 kb on - strandat 778.608 kb on - strandat 778.624 kb on + strandat 778.624 kb on + strandat 778.625 kb on - strandat 778.625 kb on - strandat 778.625 kb on - strandat 778.685 kb on - strandat 778.802 kb on + strandat 778.802 kb on + strandat 778.804 kb on + strandat 778.838 kb on + strandat 778.976 kb on + strandat 778.976 kb on + strandat 778.976 kb on + strandat 778.977 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2
remove
769,263 + GFF1902 0.74 -0.6
769,263 + GFF1902 0.74 -1.0
769,264 - GFF1902 0.74 -0.0
769,323 + GFF1902 0.76 +0.1
769,384 - GFF1902 0.78 +0.2
769,677 + GFF1902 0.88 -0.9
769,678 - GFF1902 0.88 +0.2
770,379 - +1.0
770,654 + -1.0
770,655 - -0.2
770,852 + +0.1
770,853 - +0.3
770,853 - +0.5
770,993 + GFF1903 0.11 +0.7
770,994 - GFF1903 0.11 +0.5
770,994 - GFF1903 0.11 -0.3
770,994 - GFF1903 0.11 +0.1
771,044 + GFF1903 0.12 -0.0
771,045 - GFF1903 0.12 -0.3
771,140 + GFF1903 0.13 +0.4
771,179 + GFF1903 0.13 -0.0
771,179 + GFF1903 0.13 +0.0
771,180 - GFF1903 0.13 +0.1
771,230 + GFF1903 0.14 -1.9
771,230 + GFF1903 0.14 -0.1
771,329 + GFF1903 0.15 -0.2
771,464 + GFF1903 0.17 -1.3
771,465 - GFF1903 0.17 +0.2
772,104 - GFF1903 0.24 +0.6
772,104 - GFF1903 0.24 -0.0
772,160 + GFF1903 0.25 +0.7
772,161 - GFF1903 0.25 +0.3
772,161 - GFF1903 0.25 +0.4
772,239 - GFF1903 0.26 -1.4
772,403 + GFF1903 0.28 +0.2
772,433 + GFF1903 0.28 -0.0
772,463 + GFF1903 0.29 -0.8
772,463 + GFF1903 0.29 +0.2
772,463 + GFF1903 0.29 -0.1
772,832 + GFF1903 0.33 +0.5
772,833 - GFF1903 0.33 +0.1
772,964 + GFF1903 0.35 -0.6
772,965 - GFF1903 0.35 +0.5
772,965 - GFF1903 0.35 +1.3
773,174 + GFF1903 0.37 -0.6
773,175 - GFF1903 0.37 +0.7
773,175 - GFF1903 0.37 +1.0
773,208 - GFF1903 0.38 -0.0
773,487 - GFF1903 0.41 +0.5
773,487 - GFF1903 0.41 -2.4
773,636 + GFF1903 0.43 -1.0
773,831 + GFF1903 0.45 -0.3
774,113 + GFF1903 0.48 +0.3
774,125 + GFF1903 0.49 +0.1
774,170 + GFF1903 0.49 -0.8
774,170 + GFF1903 0.49 -0.2
774,170 + GFF1903 0.49 -1.6
774,171 - GFF1903 0.49 +0.2
774,171 - GFF1903 0.49 +0.9
774,171 - GFF1903 0.49 +0.2
774,411 - GFF1903 0.52 -2.1
774,411 - GFF1903 0.52 +0.6
774,411 - GFF1903 0.52 -0.0
774,411 - GFF1903 0.52 +0.0
774,797 + GFF1903 0.57 -0.1
775,190 + GFF1903 0.61 +1.1
775,191 - GFF1903 0.61 -0.9
776,270 + GFF1903 0.74 +0.3
776,271 - GFF1903 0.74 -0.0
776,375 + GFF1903 0.76 +2.0
776,376 - GFF1903 0.76 +0.8
776,376 - GFF1903 0.76 -0.8
776,996 + GFF1903 0.83 +2.2
776,997 - GFF1903 0.83 -0.0
776,997 - GFF1903 0.83 -0.5
777,842 + -0.2
777,842 + +1.4
777,842 + +0.6
777,842 + +0.5
777,842 + -0.9
777,842 + +0.4
777,842 + -1.0
777,842 + +0.3
777,842 + -0.1
777,843 - +0.2
777,843 - -0.9
777,843 - -0.1
778,037 + +0.1
778,038 - +0.1
778,038 - +0.4
778,038 - -0.7
778,211 + -1.0
778,212 - +0.5
778,212 - -0.8
778,608 - +0.1
778,624 + -0.4
778,624 + -0.0
778,625 - -0.1
778,625 - +0.9
778,625 - +0.3
778,685 - -1.2
778,802 + -0.5
778,802 + +1.6
778,804 + +0.2
778,838 + +0.0
778,976 + -0.1
778,976 + +0.8
778,976 + +0.2
778,977 - -0.3

Or see this region's nucleotide sequence