Experiment: Ying_AminoAcid20 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1685 and GFF1686 overlap by 4 nucleotides GFF1686 and GFF1687 overlap by 1 nucleotides GFF1687 and GFF1688 are separated by 9 nucleotides GFF1688 and GFF1689 are separated by 4 nucleotides
GFF1685 - Phenylacetate-CoA oxygenase, PaaG subunit, at 537,277 to 538,290
GFF1685
GFF1686 - Phenylacetate-CoA oxygenase, PaaH subunit, at 538,287 to 538,583
GFF1686
GFF1687 - Phenylacetate-CoA oxygenase, PaaI subunit, at 538,583 to 539,425
GFF1687
GFF1688 - Phenylacetate-CoA oxygenase, PaaJ subunit, at 539,435 to 539,941
GFF1688
GFF1689 - Phenylacetate-CoA oxygenase/reductase, PaaK subunit, at 539,946 to 541,052
GFF1689
Position (kb) 538
539
540 Strain fitness (log2 ratio) -1
0
1
2 at 537.583 kb on + strand, within GFF1685 at 537.583 kb on + strand, within GFF1685 at 537.583 kb on + strand, within GFF1685 at 537.583 kb on + strand, within GFF1685 at 537.583 kb on + strand, within GFF1685 at 537.583 kb on + strand, within GFF1685 at 537.583 kb on + strand, within GFF1685 at 537.583 kb on + strand, within GFF1685 at 537.584 kb on - strand, within GFF1685 at 537.584 kb on - strand, within GFF1685 at 537.584 kb on - strand, within GFF1685 at 537.584 kb on - strand, within GFF1685 at 537.589 kb on + strand, within GFF1685 at 537.589 kb on + strand, within GFF1685 at 537.661 kb on + strand, within GFF1685 at 537.661 kb on + strand, within GFF1685 at 537.661 kb on + strand, within GFF1685 at 537.661 kb on + strand, within GFF1685 at 537.661 kb on + strand, within GFF1685 at 537.661 kb on + strand, within GFF1685 at 537.661 kb on + strand, within GFF1685 at 537.661 kb on + strand, within GFF1685 at 537.662 kb on - strand, within GFF1685 at 537.662 kb on - strand, within GFF1685 at 537.662 kb on - strand, within GFF1685 at 537.662 kb on - strand, within GFF1685 at 537.679 kb on + strand, within GFF1685 at 537.679 kb on + strand, within GFF1685 at 537.680 kb on - strand, within GFF1685 at 537.680 kb on - strand, within GFF1685 at 537.782 kb on - strand, within GFF1685 at 538.422 kb on + strand, within GFF1686 at 538.422 kb on + strand, within GFF1686 at 538.422 kb on + strand, within GFF1686 at 538.422 kb on + strand, within GFF1686 at 538.422 kb on + strand, within GFF1686 at 538.422 kb on + strand, within GFF1686 at 538.422 kb on + strand, within GFF1686 at 538.422 kb on + strand, within GFF1686 at 538.422 kb on + strand, within GFF1686 at 538.422 kb on + strand, within GFF1686 at 538.422 kb on + strand, within GFF1686 at 538.422 kb on + strand, within GFF1686 at 538.423 kb on - strand, within GFF1686 at 538.423 kb on - strand, within GFF1686 at 538.534 kb on - strand, within GFF1686 at 538.534 kb on - strand, within GFF1686 at 538.551 kb on + strand, within GFF1686 at 538.552 kb on - strand, within GFF1686 at 538.552 kb on - strand, within GFF1686 at 538.552 kb on - strand, within GFF1686 at 538.552 kb on - strand, within GFF1686 at 538.552 kb on - strand, within GFF1686 at 538.607 kb on + strand at 538.608 kb on - strand at 538.745 kb on + strand, within GFF1687 at 538.853 kb on + strand, within GFF1687 at 538.853 kb on + strand, within GFF1687 at 538.853 kb on + strand, within GFF1687 at 538.854 kb on - strand, within GFF1687 at 538.946 kb on + strand, within GFF1687 at 538.976 kb on + strand, within GFF1687 at 539.072 kb on + strand, within GFF1687 at 539.324 kb on + strand, within GFF1687 at 539.324 kb on + strand, within GFF1687 at 539.573 kb on + strand, within GFF1688 at 539.573 kb on + strand, within GFF1688 at 539.573 kb on + strand, within GFF1688 at 539.574 kb on - strand, within GFF1688 at 539.574 kb on - strand, within GFF1688 at 539.574 kb on - strand, within GFF1688 at 539.574 kb on - strand, within GFF1688 at 539.723 kb on + strand, within GFF1688 at 539.724 kb on - strand, within GFF1688 at 539.724 kb on - strand, within GFF1688 at 539.724 kb on - strand, within GFF1688 at 539.891 kb on + strand at 539.892 kb on - strand at 539.892 kb on - strand at 539.892 kb on - strand at 539.892 kb on - strand at 539.892 kb on - strand at 539.892 kb on - strand at 539.924 kb on + strand at 539.924 kb on + strand at 539.925 kb on - strand at 539.937 kb on - strand at 540.123 kb on + strand, within GFF1689 at 540.123 kb on + strand, within GFF1689 at 540.123 kb on + strand, within GFF1689 at 540.123 kb on + strand, within GFF1689 at 540.399 kb on + strand, within GFF1689 at 540.400 kb on - strand, within GFF1689
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2 remove 537,583 + GFF1685 0.30 -0.5 537,583 + GFF1685 0.30 +0.3 537,583 + GFF1685 0.30 -0.4 537,583 + GFF1685 0.30 -0.2 537,583 + GFF1685 0.30 -0.0 537,583 + GFF1685 0.30 +0.7 537,583 + GFF1685 0.30 -0.1 537,583 + GFF1685 0.30 +0.6 537,584 - GFF1685 0.30 -0.3 537,584 - GFF1685 0.30 -0.2 537,584 - GFF1685 0.30 -0.3 537,584 - GFF1685 0.30 -0.1 537,589 + GFF1685 0.31 -0.1 537,589 + GFF1685 0.31 +0.3 537,661 + GFF1685 0.38 -0.3 537,661 + GFF1685 0.38 +1.5 537,661 + GFF1685 0.38 -1.0 537,661 + GFF1685 0.38 +0.7 537,661 + GFF1685 0.38 -0.2 537,661 + GFF1685 0.38 -0.1 537,661 + GFF1685 0.38 +0.0 537,661 + GFF1685 0.38 +1.0 537,662 - GFF1685 0.38 -1.0 537,662 - GFF1685 0.38 -0.8 537,662 - GFF1685 0.38 +0.3 537,662 - GFF1685 0.38 +0.1 537,679 + GFF1685 0.40 +0.4 537,679 + GFF1685 0.40 -0.5 537,680 - GFF1685 0.40 +0.0 537,680 - GFF1685 0.40 +0.6 537,782 - GFF1685 0.50 +0.0 538,422 + GFF1686 0.45 +0.3 538,422 + GFF1686 0.45 +1.8 538,422 + GFF1686 0.45 -0.4 538,422 + GFF1686 0.45 +0.4 538,422 + GFF1686 0.45 +1.2 538,422 + GFF1686 0.45 -0.1 538,422 + GFF1686 0.45 +0.3 538,422 + GFF1686 0.45 -0.8 538,422 + GFF1686 0.45 +0.5 538,422 + GFF1686 0.45 -0.1 538,422 + GFF1686 0.45 +0.5 538,422 + GFF1686 0.45 +1.5 538,423 - GFF1686 0.46 +0.5 538,423 - GFF1686 0.46 -0.0 538,534 - GFF1686 0.83 +0.1 538,534 - GFF1686 0.83 -1.2 538,551 + GFF1686 0.89 -0.2 538,552 - GFF1686 0.89 +0.2 538,552 - GFF1686 0.89 -0.5 538,552 - GFF1686 0.89 +0.1 538,552 - GFF1686 0.89 -0.3 538,552 - GFF1686 0.89 -1.1 538,607 + -0.0 538,608 - -0.0 538,745 + GFF1687 0.19 -0.2 538,853 + GFF1687 0.32 -0.6 538,853 + GFF1687 0.32 -0.8 538,853 + GFF1687 0.32 +0.1 538,854 - GFF1687 0.32 +0.5 538,946 + GFF1687 0.43 -0.2 538,976 + GFF1687 0.47 +0.1 539,072 + GFF1687 0.58 -0.2 539,324 + GFF1687 0.88 -0.3 539,324 + GFF1687 0.88 -0.4 539,573 + GFF1688 0.27 -0.9 539,573 + GFF1688 0.27 +0.3 539,573 + GFF1688 0.27 +0.1 539,574 - GFF1688 0.27 -0.6 539,574 - GFF1688 0.27 -0.1 539,574 - GFF1688 0.27 -0.3 539,574 - GFF1688 0.27 +0.7 539,723 + GFF1688 0.57 +0.3 539,724 - GFF1688 0.57 -0.1 539,724 - GFF1688 0.57 +0.2 539,724 - GFF1688 0.57 +0.1 539,891 + +0.1 539,892 - -0.3 539,892 - +0.4 539,892 - -0.2 539,892 - +0.2 539,892 - -0.1 539,892 - -0.4 539,924 + -0.6 539,924 + -0.7 539,925 - -0.2 539,937 - +0.5 540,123 + GFF1689 0.16 -1.2 540,123 + GFF1689 0.16 +0.3 540,123 + GFF1689 0.16 +0.2 540,123 + GFF1689 0.16 -0.0 540,399 + GFF1689 0.41 -0.1 540,400 - GFF1689 0.41 -0.2
Or see this region's nucleotide sequence