Experiment: Ying_AminoAcid20 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1567 and GFF1568 overlap by 11 nucleotides GFF1568 and GFF1569 overlap by 35 nucleotides GFF1569 and GFF1570 are separated by 4 nucleotides
GFF1567 - Acetyl-CoA synthetase (ADP-forming) alpha and beta chains, putative, at 421,092 to 423,191
GFF1567
GFF1568 - 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase (EC 3.7.1.-), at 423,181 to 424,017
GFF1568
GFF1569 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 423,983 to 424,960
GFF1569
GFF1570 - Tricarboxylate transport protein TctC, at 424,965 to 425,957
GFF1570
Position (kb) 423
424
425 Strain fitness (log2 ratio) -1
0
1 at 424.044 kb on + strand at 424.045 kb on - strand at 424.078 kb on - strand at 424.086 kb on + strand, within GFF1569 at 424.086 kb on + strand, within GFF1569 at 424.086 kb on + strand, within GFF1569 at 424.086 kb on + strand, within GFF1569 at 424.087 kb on - strand, within GFF1569 at 424.105 kb on - strand, within GFF1569 at 424.182 kb on + strand, within GFF1569 at 424.935 kb on + strand at 424.967 kb on - strand at 425.038 kb on + strand at 425.131 kb on + strand, within GFF1570 at 425.387 kb on - strand, within GFF1570 at 425.473 kb on + strand, within GFF1570 at 425.473 kb on + strand, within GFF1570 at 425.473 kb on + strand, within GFF1570 at 425.474 kb on - strand, within GFF1570 at 425.569 kb on + strand, within GFF1570 at 425.569 kb on + strand, within GFF1570 at 425.569 kb on + strand, within GFF1570 at 425.570 kb on - strand, within GFF1570 at 425.570 kb on - strand, within GFF1570 at 425.570 kb on - strand, within GFF1570 at 425.617 kb on + strand, within GFF1570 at 425.617 kb on + strand, within GFF1570 at 425.675 kb on - strand, within GFF1570
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2 remove 424,044 + -0.5 424,045 - +0.2 424,078 - -0.2 424,086 + GFF1569 0.11 -0.1 424,086 + GFF1569 0.11 +0.2 424,086 + GFF1569 0.11 +0.7 424,086 + GFF1569 0.11 +0.3 424,087 - GFF1569 0.11 -0.5 424,105 - GFF1569 0.12 +1.5 424,182 + GFF1569 0.20 +0.7 424,935 + -0.1 424,967 - -0.1 425,038 + +1.5 425,131 + GFF1570 0.17 -0.3 425,387 - GFF1570 0.42 +0.8 425,473 + GFF1570 0.51 +0.3 425,473 + GFF1570 0.51 +0.1 425,473 + GFF1570 0.51 +0.2 425,474 - GFF1570 0.51 +0.2 425,569 + GFF1570 0.61 -0.5 425,569 + GFF1570 0.61 -0.3 425,569 + GFF1570 0.61 -0.5 425,570 - GFF1570 0.61 -0.1 425,570 - GFF1570 0.61 -0.1 425,570 - GFF1570 0.61 +0.1 425,617 + GFF1570 0.66 -0.9 425,617 + GFF1570 0.66 -0.3 425,675 - GFF1570 0.72 -0.1
Or see this region's nucleotide sequence