Experiment: Ying_AminoAcid20 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1445 and GFF1446 are separated by 109 nucleotides GFF1446 and GFF1447 are separated by 284 nucleotides GFF1447 and GFF1448 are separated by 16 nucleotides
GFF1445 - Flagellin protein flaA, at 300,831 to 302,003
GFF1445
GFF1446 - Flagellin protein FlaA, at 302,113 to 303,315
GFF1446
GFF1447 - Flagellar biosynthesis protein FliS, at 303,600 to 304,010
GFF1447
GFF1448 - Flagellar biosynthesis protein FliT, at 304,027 to 304,314
GFF1448
Position (kb) 302
303
304 Strain fitness (log2 ratio) -1
0
1
2 at 302.642 kb on - strand, within GFF1446 at 302.867 kb on - strand, within GFF1446 at 302.893 kb on + strand, within GFF1446 at 303.387 kb on + strand at 303.423 kb on - strand at 303.490 kb on - strand at 303.490 kb on - strand at 303.490 kb on - strand at 303.498 kb on + strand at 303.498 kb on + strand at 303.499 kb on - strand at 303.499 kb on - strand at 303.499 kb on - strand at 303.499 kb on - strand at 303.539 kb on + strand at 303.540 kb on - strand at 303.573 kb on + strand at 303.636 kb on + strand at 303.873 kb on + strand, within GFF1447 at 303.873 kb on + strand, within GFF1447 at 303.880 kb on - strand, within GFF1447 at 303.880 kb on - strand, within GFF1447 at 304.034 kb on - strand at 304.034 kb on - strand at 304.036 kb on + strand at 304.036 kb on + strand at 304.036 kb on + strand at 304.036 kb on + strand at 304.037 kb on - strand at 304.037 kb on - strand at 304.037 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 2 remove 302,642 - GFF1446 0.44 -0.7 302,867 - GFF1446 0.63 +0.5 302,893 + GFF1446 0.65 +0.1 303,387 + +1.9 303,423 - -0.4 303,490 - +1.5 303,490 - -0.9 303,490 - -0.4 303,498 + -0.2 303,498 + -0.2 303,499 - +0.1 303,499 - +2.5 303,499 - +0.1 303,499 - +0.1 303,539 + +0.6 303,540 - +1.7 303,573 + -1.2 303,636 + -0.2 303,873 + GFF1447 0.66 -0.0 303,873 + GFF1447 0.66 -0.4 303,880 - GFF1447 0.68 -0.4 303,880 - GFF1447 0.68 +0.0 304,034 - +0.8 304,034 - -0.1 304,036 + -0.1 304,036 + -0.0 304,036 + -0.3 304,036 + +0.9 304,037 - -0.3 304,037 - +0.6 304,037 - +0.7
Or see this region's nucleotide sequence